BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0112.0010.p (312 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO2619 [T] COG1702 Phosphate starvation-inducible protein PhoH,... 279 3e-75 STM0669 [T] COG1702 Phosphate starvation-inducible protein PhoH,... 275 8e-74 ZybeZ [T] COG1702 Phosphate starvation-inducible protein PhoH, p... 270 2e-72 ybeZ [T] COG1702 Phosphate starvation-inducible protein PhoH, pr... 270 2e-72 ZybeZ [T] COG1702 Phosphate starvation-inducible protein PhoH, p... 270 2e-72 >YPO2619 [T] COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase Length = 553 Score = 279 bits (714), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 20/305 (6%), Positives = 55/305 (18%), Gaps = 11/305 (3%) Query: 9 SLFGPQDGFLKIIESEIPAVIDSREAEITIRGAEREV----DMLGQLFGVLLSLIRSGYI 64 S + E + + R A R + + V L Sbjct: 39 SFVVSNQLREQQGELTSTWDLMLQTRINLSRSAVRMMMDSSNQQSNAK-VELLDSA-RKT 96 Query: 65 --LSERDIQYAVELAK--DFRADQLLDLFKGEITTTFRGKPIRVKTIGQKHYVTTIKKRD 120 + + +A + A K + T + + + Sbjct: 97 LAQAATHYKKFKSMAPLPEMVATSRNIDEKYKNYYTALTE-LIDYLDYGNTGAYFAQPTQ 155 Query: 121 IVFGIGPAGTGKTYLAVVLAVTALKEGSVKRIVLTRPAVEAGESLGFLPGDLQEKVDPYL 180 + + L+ + + + + + L + + Sbjct: 156 GMQNAMGEAFAQYALSSEKLYRDIVTDNADDYRFAQWQLAVIALVVVLILLVAWYGIRRM 215 Query: 181 RPLYDALYDVMGPDQVAKALERGLIEIAPLAYMRGRTLDDSFIILDEAQNTTPEQMKMFL 240 A + L L T + + Sbjct: 216 LLTPLAKIIAHIREIAGGNLANTLTIDGRSEMGDLAQSVSHMQRSLTDTVTHVREGSDAI 275 Query: 241 TRLGFGSKMVITGDVTQIDLPRGKKSGLIEAKTILSGIDELGFVYFAEQDVVRHSLVQKI 300 T ++ + + L+ + + + S Sbjct: 276 YAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQASQLAQSASDTA 335 Query: 301 IVAYE 305 + Sbjct: 336 QHGGK 340 >STM0669 [T] COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase Length = 553 Score = 275 bits (702), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 22/307 (7%), Positives = 55/307 (17%), Gaps = 7/307 (2%) Query: 9 SLFGPQDGFLKIIESEIPAVIDSREAEITIRG----AEREVDMLGQLFGVLLSLIRSGYI 64 + + E + S + M+ + + Sbjct: 33 LHHSQKSFVVSNQLREQQGELTSTWDLMLQTRINLSRSAVRMMMDSSNQQSNAKVELLDS 92 Query: 65 LSERDIQYAVELAK--DFRADQLLDLFKGEITTTFRGKPIRVKTIGQKHYVTTIKKRDIV 122 + Q A K + I ++ T + Sbjct: 93 ARKTLAQAATHYKKFKSMAPLPEMVATSRNIDEKYKNY-YTALTELIDYLDYGNTGAYFA 151 Query: 123 FGIGPAGTGKTYLAVVLAVTALKEGSVKRIVLTRPAVEAGESLGFLPGDLQEKVDPYLRP 182 A+++ K A L + + + Sbjct: 152 QPTQGMQNAMGEAFAQYALSSEKLYRDIVTDNADDYRFAQWQLAVIALVVVLILLVAWYG 211 Query: 183 LYDALYDVMGPDQVAKALERGLIEIAPLAYMRGRTLDDSFIILDEAQNTTPEQMKMFLTR 242 + L + G L + D + Q + + + Sbjct: 212 IRRMLLTPLAKIIAHIREIAGGNLANTLTIDGRSEMGDLAQSVSHMQRSLTDTVTHVREG 271 Query: 243 LGFGSKMVITGDVTQIDLPRGKKSGLIEAKTILSGIDELGFVYFAEQDVVRHSLVQKIIV 302 DL + + + +++L D R + Sbjct: 272 SDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQASQLAQSA 331 Query: 303 AYERSAE 309 + Sbjct: 332 SDTAQHG 338 >ZybeZ [T] COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase Length = 553 Score = 270 bits (691), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 22/307 (7%), Positives = 55/307 (17%), Gaps = 7/307 (2%) Query: 9 SLFGPQDGFLKIIESEIPAVIDSREAEITIRG----AEREVDMLGQLFGVLLSLIRSGYI 64 + + E + S + M+ + + Sbjct: 33 LHHSQKSFVVSNQLREQQGELTSTWDLMLQTRINLSRSAVRMMMDSSNQQSNAKVELLDS 92 Query: 65 LSERDIQYAVELAK--DFRADQLLDLFKGEITTTFRGKPIRVKTIGQKHYVTTIKKRDIV 122 + Q A K + I ++ T + Sbjct: 93 ARKTLAQAATHYKKFKSMAPLPEMVATSRNIDEKYKNY-YTALTELIDYLDYGNTGAYFA 151 Query: 123 FGIGPAGTGKTYLAVVLAVTALKEGSVKRIVLTRPAVEAGESLGFLPGDLQEKVDPYLRP 182 A+++ K A L + + + Sbjct: 152 QPTQGMQNAMGEAFAQYALSSEKLYRDIVTDNADDYRFAQWQLAVIALVVVLILLVAWYG 211 Query: 183 LYDALYDVMGPDQVAKALERGLIEIAPLAYMRGRTLDDSFIILDEAQNTTPEQMKMFLTR 242 + L + G L + D + Q + + + Sbjct: 212 IRRMLLTPLAKIIAHIREIAGGNLANTLTIDGRSEMGDLAQSVSHMQRSLTDTVTHVREG 271 Query: 243 LGFGSKMVITGDVTQIDLPRGKKSGLIEAKTILSGIDELGFVYFAEQDVVRHSLVQKIIV 302 DL + + + +++L D R + Sbjct: 272 SDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQASQLAQSA 331 Query: 303 AYERSAE 309 + Sbjct: 332 SDTAQHG 338 >ybeZ [T] COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase Length = 553 Score = 270 bits (691), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 22/307 (7%), Positives = 55/307 (17%), Gaps = 7/307 (2%) Query: 9 SLFGPQDGFLKIIESEIPAVIDSREAEITIRG----AEREVDMLGQLFGVLLSLIRSGYI 64 + + E + S + M+ + + Sbjct: 33 LHHSQKSFVVSNQLREQQGELTSTWDLMLQTRINLSRSAVRMMMDSSNQQSNAKVELLDS 92 Query: 65 LSERDIQYAVELAK--DFRADQLLDLFKGEITTTFRGKPIRVKTIGQKHYVTTIKKRDIV 122 + Q A K + I ++ T + Sbjct: 93 ARKTLAQAATHYKKFKSMAPLPEMVATSRNIDEKYKNY-YTALTELIDYLDYGNTGAYFA 151 Query: 123 FGIGPAGTGKTYLAVVLAVTALKEGSVKRIVLTRPAVEAGESLGFLPGDLQEKVDPYLRP 182 A+++ K A L + + + Sbjct: 152 QPTQGMQNAMGEAFAQYALSSEKLYRDIVTDNADDYRFAQWQLAVIALVVVLILLVAWYG 211 Query: 183 LYDALYDVMGPDQVAKALERGLIEIAPLAYMRGRTLDDSFIILDEAQNTTPEQMKMFLTR 242 + L + G L + D + Q + + + Sbjct: 212 IRRMLLTPLAKIIAHIREIAGGNLANTLTIDGRSEMGDLAQSVSHMQRSLTDTVTHVREG 271 Query: 243 LGFGSKMVITGDVTQIDLPRGKKSGLIEAKTILSGIDELGFVYFAEQDVVRHSLVQKIIV 302 DL + + + +++L D R + Sbjct: 272 SDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQASQLAQSA 331 Query: 303 AYERSAE 309 + Sbjct: 332 SDTAQHG 338 Score = 270 bits (691), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 22/307 (7%), Positives = 55/307 (17%), Gaps = 7/307 (2%) Query: 9 SLFGPQDGFLKIIESEIPAVIDSREAEITIRG----AEREVDMLGQLFGVLLSLIRSGYI 64 + + E + S + M+ + + Sbjct: 33 LHHSQKSFVVSNQLREQQGELTSTWDLMLQTRINLSRSAVRMMMDSSNQQSNAKVELLDS 92 Query: 65 LSERDIQYAVELAK--DFRADQLLDLFKGEITTTFRGKPIRVKTIGQKHYVTTIKKRDIV 122 + Q A K + I ++ T + Sbjct: 93 ARKTLAQAATHYKKFKSMAPLPEMVATSRNIDEKYKNY-YTALTELIDYLDYGNTGAYFA 151 Query: 123 FGIGPAGTGKTYLAVVLAVTALKEGSVKRIVLTRPAVEAGESLGFLPGDLQEKVDPYLRP 182 A+++ K A L + + + Sbjct: 152 QPTQGMQNAMGEAFAQYALSSEKLYRDIVTDNADDYRFAQWQLAVIALVVVLILLVAWYG 211 Query: 183 LYDALYDVMGPDQVAKALERGLIEIAPLAYMRGRTLDDSFIILDEAQNTTPEQMKMFLTR 242 + L + G L + D + Q + + + Sbjct: 212 IRRMLLTPLAKIIAHIREIAGGNLANTLTIDGRSEMGDLAQSVSHMQRSLTDTVTHVREG 271 Query: 243 LGFGSKMVITGDVTQIDLPRGKKSGLIEAKTILSGIDELGFVYFAEQDVVRHSLVQKIIV 302 DL + + + +++L D R + Sbjct: 272 SDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQASQLAQSA 331 Query: 303 AYERSAE 309 + Sbjct: 332 SDTAQHG 338 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.140 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,532,095 Number of extensions: 999297 Number of successful extensions: 6364 Number of sequences better than 1.0e-05: 16 Number of HSP's gapped: 6354 Number of HSP's successfully gapped: 16 Length of query: 312 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 206 Effective length of database: 26,153,027 Effective search space: 5387523562 Effective search space used: 5387523562 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 116 (49.3 bits)