BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0112.0001.p
         (630 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

alr3988 [L] COG0419 ATPase involved in DNA repair                      52   3e-06
STM1636 [E] COG0765 ABC-type amino acid transport system, permea...    51   5e-06

>alr3988 [L] COG0419 ATPase involved in DNA repair
          Length = 673

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 0/101 (0%), Positives = 0/101 (0%), Gaps = 3/101 (2%)

Query: 527  RPVSTLSGGETFLTXXXXXXXXXXQIQLRGQYPLQFFFLDEGFGTLDPDLLDTVITSLER 586
                                                                        
Sbjct: 909                                                               968

Query: 587  LHNDQLSVGIISHVPELRARLPRKLVVIPAEQGGGGSRIIL 627
                                                     
Sbjct: 969  ---                                       1006


>STM1636 [E] COG0765 ABC-type amino acid transport system, permease
           component
          Length = 226

 Score = 51.2 bits (121), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 0/141 (0%), Positives = 0/141 (0%), Gaps = 14/141 (9%)

Query: 477 FVEYIAEEQLMQVCQAASQRLRFLSKQRYALEVDS-GGGFVIRDDGNGGVRRPVSTLSGG 535
                                                                       
Sbjct: 714 ---                                                          770

Query: 536 ETFLTXXXXXXXXXXQIQLRGQYPLQFFFLDEGFGTLD---PDLLDTVITSLERLHNDQL 592
                                                                       
Sbjct: 771 -------                                                      823

Query: 593 SVGIISHVPELRARLPRKLVV 613
                                
Sbjct: 824                       844


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.314    0.129    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 36,513,785
Number of extensions: 1326981
Number of successful extensions: 3658
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3657
Number of HSP's successfully gapped: 2
Length of query: 630
Length of database: 38,378,431
Length adjustment: 113
Effective length of query: 517
Effective length of database: 25,345,689
Effective search space: 13103721213
Effective search space used: 13103721213
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 119 (50.4 bits)