BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0111.0001.p
         (282 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Ta0153 [M] COG0463 Glycosyltransferases involved in cell wall bi...    73   4e-13
TVN0223 [M] COG0463 Glycosyltransferases involved in cell wall b...    64   3e-10
MTH1392 [M] COG0463 Glycosyltransferases involved in cell wall b...    60   4e-09
PAB1981 [M] COG0463 Glycosyltransferases involved in cell wall b...    59   8e-09
MTH884_1 [M] COG0463 Glycosyltransferases involved in cell wall ...    57   3e-08

>Ta0153 [M] COG0463 Glycosyltransferases involved in cell wall biogenesis
          Length = 225

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 55/96 (57%), Gaps = 3/96 (3%)

Query: 44  VSVIIPAMNEAGTIAKVIAGARGVHPRCEVIVVVNGSLDNTADIALSQGARVILFEQP-L 102
           VS +IP +NE GTI  VI G R   P  E+IVV   S D T +IA S+GARVI  E+P  
Sbjct: 8   VSFVIPTINEEGTIGSVIDGIRSEFPNSEIIVVDTNSTDRTREIARSKGARVI--EEPRR 65

Query: 103 GHDVGRSIGAEAAKGEVLLFTDGDLVIPASQLRPFV 138
           G+      G  AA GE+++  DGD   P   ++P +
Sbjct: 66  GYGRAYQTGIPAASGEIIVCMDGDGTYPTDVVKPLI 101


>TVN0223 [M] COG0463 Glycosyltransferases involved in cell wall biogenesis
          Length = 226

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 3/96 (3%)

Query: 44  VSVIIPAMNEAGTIAKVIAGARGVHPRCEVIVVVNGSLDNTADIALSQGARVILFEQP-L 102
           +S +IP +NE  TI  VI G     P  E+I+V   S D T +IA S+GA VI  E+P  
Sbjct: 9   ISFVIPTINEEKTIGSVIDGIHENFPNAEIILVDTNSTDKTKEIAKSKGATVI--EEPRK 66

Query: 103 GHDVGRSIGAEAAKGEVLLFTDGDLVIPASQLRPFV 138
           G+      G  AAKG++++  DGD   P   ++P +
Sbjct: 67  GYGRAYQTGIPAAKGDIIVCMDGDGTYPTDIVKPLI 102


>MTH1392 [M] COG0463 Glycosyltransferases involved in cell wall biogenesis
          Length = 268

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 6/84 (7%), Positives = 15/84 (17%)

Query: 44  VSVIIPAMNEAGTIAKVIAGARGVHPRCEVIVVVNGSLDNTADIALSQGARVILFEQPLG 103
              ++     A                 E   + +          L +    I+ E    
Sbjct: 25  TYKVVLIARAASIFGVKRIVIYHDDADGEARFIRDILTYMDTPQYLRRKVFPIMRELKHV 84

Query: 104 HDVGRSIGAEAAKGEVLLFTDGDL 127
             +          G+ +       
Sbjct: 85  GILPPLRTPHHPTGKPVTGEYRQG 108


>PAB1981 [M] COG0463 Glycosyltransferases involved in cell wall biogenesis
          Length = 211

 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 48/85 (56%), Gaps = 6/85 (7%)

Query: 44  VSVIIPAMNEAGTIAKVIAGARGVHPRC--EVIVVVNGSLDNTADIALSQGARVILFEQP 101
           VSVIIPA NE   I KV+A      P    EVIVV +GS DNTAD+A   G RVI   + 
Sbjct: 3   VSVIIPAYNEEKRIGKVLAEI----PEFVNEVIVVDDGSKDNTADVAKRFGVRVIRLPEN 58

Query: 102 LGHDVGRSIGAEAAKGEVLLFTDGD 126
            G       G + AKG++++F D D
Sbjct: 59  RGKGAAMREGIKHAKGDIIVFMDAD 83


>MTH884_1 [M] COG0463 Glycosyltransferases involved in cell wall biogenesis
          Length = 301

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 8/96 (8%), Positives = 15/96 (15%), Gaps = 4/96 (4%)

Query: 44  VSVIIPAMNEAGTIAKVIAGARGV-HPRCEVIVVVNGSLDNTADIALSQGARVILFEQPL 102
           +               V            ++ +    +      I               
Sbjct: 3   IDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVD 62

Query: 103 GHDVGRSIGAEAAKGEVLLFTDGDLVIPASQLRPFV 138
                     E      L+       I   +L  FV
Sbjct: 63  ---TPGLHMEEKRAINRLMNKAASSSIGDVELVIFV 95


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.321    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 16,559,940
Number of extensions: 644858
Number of successful extensions: 1269
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 1312
Number of HSP's successfully gapped: 23
Length of query: 282
Length of database: 38,378,431
Length adjustment: 105
Effective length of query: 177
Effective length of database: 26,268,361
Effective search space: 4649499897
Effective search space used: 4649499897
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)