BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0109.0028.p (397 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH3407 [C] COG1252 NADH dehydrogenase, FAD-containing subunit 438 e-123 BS_yumB [C] COG1252 NADH dehydrogenase, FAD-containing subunit 426 e-119 lin2488 [C] COG1252 NADH dehydrogenase, FAD-containing subunit 362 e-100 SA0802 [C] COG1252 NADH dehydrogenase, FAD-containing subunit 313 2e-85 BS_yjlD [C] COG1252 NADH dehydrogenase, FAD-containing subunit 259 4e-69 >BH3407 [C] COG1252 NADH dehydrogenase, FAD-containing subunit Length = 400 Score = 438 bits (1126), Expect = e-123, Method: Compositional matrix adjust. Identities = 220/394 (55%), Positives = 281/394 (71%), Gaps = 3/394 (0%) Query: 5 PKIVILGAGYGGILTAQRLQKALNYNEADVTLVNRHEYHYFTTHLHMPAAGTDSIEHTRV 64 P IVILGAGYGGI+TA RL K L +N+A++TLVN+H YHY TT LH PAAGT E RV Sbjct: 4 PNIVILGAGYGGIITASRLSKQLGHNDANITLVNKHSYHYQTTWLHEPAAGTIPAEKARV 63 Query: 65 SISKLIDEFKIDLVKSSVQEIRTQQKKVILEDGTLSYDYLVIALGGEPETFGIPGLDKYA 124 I ++D K++ V+ + EI KKV+LE+G L YDYLV+ALG ETFG+PG+ ++A Sbjct: 64 PIKDVLDLNKVNFVQDTAVEIDRDAKKVVLENGELEYDYLVVALGSVAETFGVPGVFEHA 123 Query: 125 LTIRSINSVRLIREHIEYQFAKYKN-ENNAQEHINFVVGGAGFSGIEFVAELADRIPALC 183 + ++N R ++EHIEY FA Y N E E + F+V GAGF+GIEFV EL+ R+P LC Sbjct: 124 FSKWTVNGARQVKEHIEYMFATYNNLEEKKDELLTFIVAGAGFTGIEFVGELSKRVPELC 183 Query: 184 KEFDVDPSMVNIYNVEAAPTALPGFAPELVEHAMTVLTKKGVTFKIGVAIKECLPGGVIL 243 +DV V +Y +EAAPTALPGF PELVE+AM +L +GV FKI IKE + GVIL Sbjct: 184 ATYDVPREKVKMYVIEAAPTALPGFDPELVEYAMNLLESRGVEFKINCPIKEVVKDGVIL 243 Query: 244 ATGEEIKASTIVWTGGIRGNRLIEAAGFEAMRGRVKVDEYLRAPGHENIFIIGDGSLMIN 303 A G+EIK++T+VW G+RG +IE +GFEAMRGR+KV+ LRAPGHE IF+IGD +L+IN Sbjct: 244 ANGDEIKSNTVVWATGVRGPEIIEKSGFEAMRGRIKVESDLRAPGHEEIFVIGDCALIIN 303 Query: 304 PE-GRPYPPTAQIAMQQGECCAHNLVAAIR-SQQPKKFAFSNKGTVASLGKGQGIAVVGD 361 E RPYPPTAQIA+Q E CAHNL ++ + K F KGTVASLG + I VVG Sbjct: 304 EEINRPYPPTAQIAIQMAETCAHNLATLVKGGSELKNFKPEIKGTVASLGGKEAIGVVGT 363 Query: 362 KKYKGWTAAQLKKVVDMRYLFIIGGIPLVLKKGR 395 +K G +A+ +KKV+D R LF+IGG L+LKKG+ Sbjct: 364 RKLFGSSASFMKKVIDNRSLFLIGGPGLLLKKGK 397 >BS_yumB [C] COG1252 NADH dehydrogenase, FAD-containing subunit Length = 406 Score = 426 bits (1094), Expect = e-119, Method: Compositional matrix adjust. Identities = 216/398 (54%), Positives = 283/398 (71%), Gaps = 6/398 (1%) Query: 5 PKIVILGAGYGGILTAQRLQKALNYNEADVTLVNRHEYHYFTTHLHMPAAGTDSIEHTRV 64 PKIVILGAGYGG++T RL K + N+AD+TLVN+H YHY TT +H +AGT + R Sbjct: 6 PKIVILGAGYGGLMTVTRLTKYVGPNDADITLVNKHNYHYETTWMHEASAGTLHHDRCRY 65 Query: 65 SISKLIDEFKIDLVKSSVQEIRTQQKKVILEDGTLSYDYLVIALGGEPETFGIPGLDKYA 124 I +I++ +++ V+ +V+ I+ +KKV+L +G L YDYLVI LG PETFGI GL +YA Sbjct: 66 QIKDVINQSRVNFVQDTVKAIKIDEKKVVLANGELQYDYLVIGLGAVPETFGIKGLKEYA 125 Query: 125 LTIRSINSVRLIREHIEYQFAKYKNENNAQ-EHINFVVGGAGFSGIEFVAELADRIPALC 183 I +IN+ RL+REHIE QFA Y E + + + VVGGAGF+GIEF+ ELA R+P LC Sbjct: 126 FPIANINTSRLLREHIELQFATYNTEAEKRPDRLTIVVGGAGFTGIEFLGELAARVPELC 185 Query: 184 KEFDVDPSMVNIYNVEAAPTALPGFAPELVEHAMTVLTKKGVTFKIGVAIKECLPGGVIL 243 KE+DVD S+V I VEAAPT LPGF PELV++A+ L + GV FKIG A++EC P GV + Sbjct: 186 KEYDVDRSLVRIICVEAAPTVLPGFDPELVDYAVHYLEENGVEFKIGTAVQECTPEGVRV 245 Query: 244 ATGEE----IKASTIVWTGGIRGNRLIEAAGFEAMRGRVKVDEYLRAPGHENIFIIGDGS 299 +E IK+ T+VW G+RG+ ++E AGFE MRGRVKV+ LRAPGH+N+FI+GD S Sbjct: 246 GKKDEEPEQIKSQTVVWAAGVRGHPIVEEAGFENMRGRVKVNPDLRAPGHDNVFILGDSS 305 Query: 300 LMINPEG-RPYPPTAQIAMQQGECCAHNLVAAIRSQQPKKFAFSNKGTVASLGKGQGIAV 358 L +N + RPYPPTAQIAMQQG A NL I+ + ++F KGTVASLG+ + V Sbjct: 306 LFMNEDTERPYPPTAQIAMQQGITVAKNLGRLIKGGELEEFKPDIKGTVASLGEHNAVGV 365 Query: 359 VGDKKYKGWTAAQLKKVVDMRYLFIIGGIPLVLKKGRF 396 V +K KG A+ +KKV+D R LF+IGG+ L LKKG+F Sbjct: 366 VYGRKLKGTPASFMKKVIDNRSLFMIGGLGLTLKKGKF 403 >lin2488 [C] COG1252 NADH dehydrogenase, FAD-containing subunit Length = 403 Score = 362 bits (929), Expect = e-100, Method: Compositional matrix adjust. Identities = 196/401 (48%), Positives = 263/401 (65%), Gaps = 10/401 (2%) Query: 3 SIPKIVILGAGYGGILTAQRLQKALNYNEADVTLVNRHEYHYFTTHLHMPAAGTDSIEHT 62 S PKIVILGAGYGG+ T ++LQ+ +A++ LVN+++YH+ TT LH AAGT E Sbjct: 2 SKPKIVILGAGYGGLKTLRKLQQ--RNLDAEIVLVNKNDYHHETTWLHEAAAGTIEPEKL 59 Query: 63 RVSISKLIDEFKIDLVKSSVQEIRTQQKKVILE-DGTLSYDYLVIALGGEPETFGIPGLD 121 + K+++ K ++ +V +I +K V L+ +G +SYDYL+I LG E ETFGI GL Sbjct: 60 MYPLDKVVNNTKTTFIQDTVVKINKDEKTVTLDANGDISYDYLLIGLGSEAETFGISGLK 119 Query: 122 KYALTIRSINSVRLIREHIEYQFAKYKNENNAQEHINFVVGGAGFSGIEFVAELADRIPA 181 +YA TI S+ SV+ IR HIE QFAK+K + E + +VGGAGF+GIEF+ EL +RIP Sbjct: 120 EYAFTITSVESVKKIRAHIEAQFAKWKTDPR-DELLTIIVGGAGFTGIEFLGELTNRIPE 178 Query: 182 LCKEFDVDPSMVNIYNVEAAPTALPGFAPELVEHAMTVLTKKGVTFKIGVAIKECLPGGV 241 L KE+DV V IY +EAAP LP F +LV++ + VL +GV F +G +KE GV Sbjct: 179 LVKEYDVPREKVRIYCMEAAPKVLPQFDAKLVDYGVGVLEDRGVEFHVGKPVKEATADGV 238 Query: 242 ILATGE----EIKASTIVWTGGIRGNRLIEAAGFEAMRGRVKVDEYLRAPGHENIFIIGD 297 A E EIKA+TI+W G+RGN +IEA+GFEA RGRVKV+ L PG+E I I+GD Sbjct: 239 KYAESETEVREIKAATIIWAAGVRGNSVIEASGFEAGRGRVKVNNNLTVPGNEEILIVGD 298 Query: 298 GSLMINP-EGRPYPPTAQIAMQQGECCAHNLVAAIRSQQP-KKFAFSNKGTVASLGKGQG 355 SL+INP RP+PPTAQIAMQQ + A NL ++ + + F + KGTV SLG Sbjct: 299 CSLIINPANDRPFPPTAQIAMQQADVAAVNLAKLVKGETDLQDFVYHEKGTVCSLGDNDA 358 Query: 356 IAVVGDKKYKGWTAAQLKKVVDMRYLFIIGGIPLVLKKGRF 396 I VV K KG+ A+ +KKV+D R L +IGG ++ KG+F Sbjct: 359 IGVVFGKNLKGYPASVMKKVIDDRALLLIGGSGVLASKGKF 399 >SA0802 [C] COG1252 NADH dehydrogenase, FAD-containing subunit Length = 402 Score = 313 bits (803), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 169/396 (42%), Positives = 243/396 (61%), Gaps = 5/396 (1%) Query: 6 KIVILGAGYGGILTAQRLQKALNYNEADVTLVNRHEYHYFTTHLHMPAAGTDSIEHTRVS 65 K+++LGAGY G+ T +LQKA++ EA++TL+N++EYHY T LH +AGT + E Sbjct: 7 KVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATWLHEASAGTLNYEDVLYP 66 Query: 66 ISKLIDEFKIDLVKSSVQEIRTQQKKVILEDGTLSYDYLVIALGGEPETFGIPGLDKYAL 125 + ++ + K++ V++ V +I KKV G +D LV+ALG ETFGI G+ +A Sbjct: 67 VESVLKKDKVNFVQAEVTKIDRDAKKVETNQGIYDFDILVVALGFVSETFGIEGMKDHAF 126 Query: 126 TIRSINSVRLIREHIEYQFAKYKNENNAQEH-INFVVGGAGFSGIEFVAELADRIPALCK 184 I ++ + R + HIE +FA Y ++ ++ +VGGAGF+G+EF+ EL DRIP LC Sbjct: 127 QIENVITARELSRHIEDKFANYAASKEKDDNDLSILVGGAGFTGVEFLGELTDRIPELCS 186 Query: 185 EFDVDPSMVNIYNVEAAPTALPGFAPELVEHAMTVLTKKGVTFKIGVAIKECLPGG-VIL 243 ++ VD + V I VEAAP LP F+ ELV HA++ L +GV FKI I C G V+ Sbjct: 187 KYGVDQNKVKITCVEAAPKMLPMFSEELVNHAVSYLEDRGVEFKIATPIVACNEKGFVVE 246 Query: 244 ATGE--EIKASTIVWTGGIRGNRLIEAAGFEAMRGRVKVDEYLRAPGHENIFIIGDGSLM 301 GE ++ A T VW G+RG++L+E + RGR+ + L G++NIF+IGD S Sbjct: 247 VDGEKQQLNAGTSVWAAGVRGSKLMEESFEGVKRGRIVTKQDLTINGYDNIFVIGDCSAF 306 Query: 302 INP-EGRPYPPTAQIAMQQGECCAHNLVAAIRSQQPKKFAFSNKGTVASLGKGQGIAVVG 360 I E RP P TAQIAMQQGE A N+ + + ++F + ++GTV SLG G+ +V Sbjct: 307 IPAGEERPLPTTAQIAMQQGESVAKNIKRILNGESTEEFEYVDRGTVCSLGSHDGVGMVF 366 Query: 361 DKKYKGWTAAQLKKVVDMRYLFIIGGIPLVLKKGRF 396 K G AA +KKV+D R +F IGGI L KKG+F Sbjct: 367 GKPIAGKKAAFMKKVIDTRAVFKIGGIGLAFKKGKF 402 >BS_yjlD [C] COG1252 NADH dehydrogenase, FAD-containing subunit Length = 392 Score = 259 bits (663), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 148/387 (38%), Positives = 223/387 (57%), Gaps = 10/387 (2%) Query: 7 IVILGAGYGGILTAQRLQKALNYNEADVTLVNRHEYHYFTTHLHMPAAGTDSIEHTRVSI 66 IVILGAGYGG+L+A ++K +A VT+VN++ H T LH AAG S + + + Sbjct: 5 IVILGAGYGGVLSALTVRKHYTKEQARVTVVNKYPTHQIITELHRLAAGNVSEKAVAMPL 64 Query: 67 SKLIDEFKIDLVKSSVQEIRTQQKKVILEDG-TLSYDYLVIALGGEPETFGIPGLDKYAL 125 KL IDL + V +K+V L DG TL+YD LV+ LG FGIPGL++ ++ Sbjct: 65 EKLFKGKDIDLKIAEVSSFSVDKKEVALADGSTLTYDALVVGLGSVTAYFGIPGLEENSM 124 Query: 126 TIRSINSVRLIREHIE---YQFAKYKNENNAQEHINFVVGGAGFSGIEFVAELADRIPAL 182 ++S + +H+E +++K KNE +A I +G+E V ELAD +P L Sbjct: 125 VLKSAADANKVFQHVEDRVREYSKTKNEADATILIGGGG----LTGVELVGELADIMPNL 180 Query: 183 CKEFDVDPSMVNIYNVEAAPTALPGFAPELVEHAMTVLTKKGVTFKIGVAIKECLPGGVI 242 K++ VD + + VEA P LP +L+E A L K+GV F G+ + + Sbjct: 181 AKKYGVDHKEIKLKLVEAGPKILPVLPDDLIERATASLEKRGVEFLTGLPVTNVEGNVID 240 Query: 243 LATGEEIKASTIVWTGGIRGNRLIEAAGFEAMRGRVKVDEYLRAPGHENIFIIGDGSLMI 302 L G ++ A+T VWTGG++GN L+ +G E RGR V+++L++ HE++F+ GD ++ Sbjct: 241 LKDGSKVVANTFVWTGGVQGNPLVGESGLEVNRGRATVNDFLQSTSHEDVFVAGDSAVYF 300 Query: 303 NPEGRPYPPTAQIAMQQGECCAHNLVAAIRSQQPKKFAFSNKGTVASLGKGQGIAVVG-- 360 P+GRPYPPTAQIA Q GE +NL A + + + F N GT+ASLG+ +A++G Sbjct: 301 GPDGRPYPPTAQIAWQMGELIGYNLFAYLEGKTLETFKPVNSGTLASLGRKDAVAIIGAN 360 Query: 361 DKKYKGWTAAQLKKVVDMRYLFIIGGI 387 KG A+ +K+ ++RYL I G+ Sbjct: 361 STPLKGLPASLMKEASNVRYLTHIKGL 387 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.138 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 30,593,398 Number of extensions: 1277465 Number of successful extensions: 3659 Number of sequences better than 1.0e-05: 62 Number of HSP's gapped: 3507 Number of HSP's successfully gapped: 62 Length of query: 397 Length of database: 38,378,431 Length adjustment: 109 Effective length of query: 288 Effective length of database: 25,807,025 Effective search space: 7432423200 Effective search space used: 7432423200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 117 (49.7 bits)