BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0109.0018.p
         (82 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

asr1309 [O] COG0694 Thioredoxin-like proteins and domains              77   4e-15
all1456_2 [O] COG0694 Thioredoxin-like proteins and domains            64   5e-11
Cj1639 [O] COG0694 Thioredoxin-like proteins and domains               57   7e-09
jhp1385 [O] COG0694 Thioredoxin-like proteins and domains              55   2e-08
HP1492 [O] COG0694 Thioredoxin-like proteins and domains               55   2e-08

>asr1309 [O] COG0694 Thioredoxin-like proteins and domains
          Length = 111

 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 6/57 (10%), Positives = 11/57 (19%)

Query: 12 DEVLEVLDKLRPFLQRDGGDVELIDVEDGIVKLKLMGACGSCPSSTITLKAGIERAL 68
          + +              G        E             + P+ T   K   + A 
Sbjct: 6  EGMTMKKVLALVVAAAMGLSSAAFAAETTTTPAPTATTTKAAPAKTTHHKKQHKAAP 62


>all1456_2 [O] COG0694 Thioredoxin-like proteins and domains
          Length = 117

 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 44/65 (67%), Gaps = 2/65 (3%)

Query: 4   NLQSTTMYDEVLEVLDKLRPFLQRDGGDVELIDVEDGIVKLKLMGACGSCPSSTITLKAG 63
           N+Q   +  +VL+  +++RP L  DGGDVEL DV+  IVK+ L GACGSC SST TLK  
Sbjct: 42  NVQKIALIQKVLD--EEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIA 99

Query: 64  IERAL 68
           IE  L
Sbjct: 100 IESRL 104


>Cj1639 [O] COG0694 Thioredoxin-like proteins and domains
          Length = 90

 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 39/59 (66%)

Query: 10 MYDEVLEVLDKLRPFLQRDGGDVELIDVEDGIVKLKLMGACGSCPSSTITLKAGIERAL 68
          + + V   L+K  P L+RDGG +E + +++GIV + L+GAC  C SS  TLK G+ER L
Sbjct: 9  LINPVKASLEKSLPMLERDGGGLEFLGIKNGIVYVHLIGACKGCASSGTTLKYGLERQL 67


>jhp1385 [O] COG0694 Thioredoxin-like proteins and domains
          Length = 89

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 38/52 (73%)

Query: 17 VLDKLRPFLQRDGGDVELIDVEDGIVKLKLMGACGSCPSSTITLKAGIERAL 68
          V++K+RP+L +DGG++E++ V+   + + L GAC +C SS ITLK  IER L
Sbjct: 16 VIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIERQL 67


>HP1492 [O] COG0694 Thioredoxin-like proteins and domains
          Length = 89

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 38/52 (73%)

Query: 17 VLDKLRPFLQRDGGDVELIDVEDGIVKLKLMGACGSCPSSTITLKAGIERAL 68
          V++K+RP+L +DGG++E++ V+   + + L GAC +C SS ITLK  IER L
Sbjct: 16 VIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIERQL 67


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.139    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 4,688,509
Number of extensions: 144757
Number of successful extensions: 373
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 375
Number of HSP's successfully gapped: 6
Length of query: 82
Length of database: 38,378,431
Length adjustment: 52
Effective length of query: 30
Effective length of database: 32,381,063
Effective search space: 971431890
Effective search space used: 971431890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)