BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0109.0016.p (222 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA5504 [P] COG2011 ABC-type metal ion transport system, permease... 221 9e-58 PA2351 [P] COG2011 ABC-type metal ion transport system, permease... 178 5e-45 YPO1072 [P] COG2011 ABC-type metal ion transport system, permeas... 160 2e-39 lin0311 [P] COG2011 ABC-type metal ion transport system, permeas... 158 5e-39 STM0512 [P] COG2011 ABC-type metal ion transport system, permeas... 156 2e-38 >PA5504 [P] COG2011 ABC-type metal ion transport system, permease component Length = 225 Score = 221 bits (562), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 124/219 (56%), Positives = 169/219 (77%) Query: 4 LNFNEINWEEMLDAGIATLRMLAYSGIFTIILGLPLGIVLYLWGRSNHFIIRSIYSVLSF 63 ++F I+W E+ A + T ML S +FT++LGLPLG++L+L G F +++Y++LS Sbjct: 7 MSFANIDWYEIWLASVDTFWMLGGSLLFTVVLGLPLGVLLFLTGPRQMFEQKAVYTLLSL 66 Query: 64 VVNILRSVPFIILMVALIPLSKSIMGTSIGVLGTIPALVIGAAPFFARLVETALREVDRG 123 VVNILRS+PFIIL++ +IPL+ I GTS+GV G IP LV+GA PFFARLVETALREVD+G Sbjct: 67 VVNILRSLPFIILLIVMIPLTVLITGTSLGVAGAIPPLVVGATPFFARLVETALREVDKG 126 Query: 124 VIEAAQGMGASTGQIVWRVLLPEARPGLLAGVTITIVTLVSYTAMSXXXXXXXXXDLAIR 183 +IEA Q MGAST QI+W LLPEARPG++A +T+T +TLVSYTAM+ DLAIR Sbjct: 127 IIEATQAMGASTRQIIWNALLPEARPGIIAAITVTAITLVSYTAMAGVVGAGGLGDLAIR 186 Query: 184 YGYYRYEKEVMIISVALMVILVQLLQMAGDRLVQHFTRK 222 +GY R++ +VM+++V +++ILVQ+LQ GD+LV HF+RK Sbjct: 187 FGYQRFQTDVMVVTVVMLLILVQILQTVGDKLVVHFSRK 225 >PA2351 [P] COG2011 ABC-type metal ion transport system, permease component Length = 217 Score = 178 bits (452), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 96/212 (45%), Positives = 137/212 (64%), Gaps = 4/212 (1%) Query: 11 WEEMLDAGIATLRMLAYSGIFTIILGLPLGIVLYLWGRSNHFIIRSIYSVLSFVVNILRS 70 W+ LD TL M+ S +++G+PL +VL G F R + +L +VN+LRS Sbjct: 9 WQGFLD----TLLMIGASSAIVLLVGIPLALVLVTTGPGGIFEARLLNRILGGLVNVLRS 64 Query: 71 VPFIILMVALIPLSKSIMGTSIGVLGTIPALVIGAAPFFARLVETALREVDRGVIEAAQG 130 VPF+ILMVALIP ++ I+GTS GV + L I A PFFAR+ E +LREVD G++EAAQ Sbjct: 65 VPFLILMVALIPFTRMIVGTSYGVWAAVVPLTIAATPFFARIAEVSLREVDHGLVEAAQA 124 Query: 131 MGASTGQIVWRVLLPEARPGLLAGVTITIVTLVSYTAMSXXXXXXXXXDLAIRYGYYRYE 190 MG I+ VLLPEARPG++ G TIT+VT+++ +AM+ DLA RYGY R++ Sbjct: 125 MGCERRHIICNVLLPEARPGIVGGFTITLVTMINSSAMAGAIGAGGLGDLAYRYGYQRFD 184 Query: 191 KEVMIISVALMVILVQLLQMAGDRLVQHFTRK 222 +VM+ + ++V+LV L+Q GDRL + ++ Sbjct: 185 TQVMLTVIIVLVLLVTLIQFGGDRLARLLNKR 216 >YPO1072 [P] COG2011 ABC-type metal ion transport system, permease component Length = 217 Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 97/202 (48%), Positives = 131/202 (64%) Query: 21 TLRMLAYSGIFTIILGLPLGIVLYLWGRSNHFIIRSIYSVLSFVVNILRSVPFIILMVAL 80 TL M SG F +LGLP+G++LY+ IY LS VVNI RS+PFIIL+V + Sbjct: 16 TLMMTFVSGFFGFVLGLPVGVLLYVTRPGQIIANNKIYRTLSGVVNIFRSIPFIILLVWM 75 Query: 81 IPLSKSIMGTSIGVLGTIPALVIGAAPFFARLVETALREVDRGVIEAAQGMGASTGQIVW 140 IP ++ I+GTSIG+ I L +GAAPF AR+VE AL E+ G++EAA+ MGA+ QI+ Sbjct: 76 IPFTRMIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPSGLVEAARAMGATPMQIIK 135 Query: 141 RVLLPEARPGLLAGVTITIVTLVSYTAMSXXXXXXXXXDLAIRYGYYRYEKEVMIISVAL 200 +VLLPEA PGL+ TIT++TLV Y+AM + +YGY Y VM + L Sbjct: 136 KVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVL 195 Query: 201 MVILVQLLQMAGDRLVQHFTRK 222 +VILV L+Q++GDR+V+ T K Sbjct: 196 LVILVYLIQLSGDRIVKAVTHK 217 >lin0311 [P] COG2011 ABC-type metal ion transport system, permease component Length = 220 Score = 158 bits (400), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 92/223 (41%), Positives = 145/223 (65%), Gaps = 9/223 (4%) Query: 4 LNFNEINWEEMLDAG-IATLRMLAYSGIFTIILGLPLGIVLYLW---GRSNHFIIRSIYS 59 L F E W +L G + TL M + + ++ +GLPLG+ L L G+S + ++ YS Sbjct: 3 LFFEE--WGPILWQGFLETLTMTGITLVISLAIGLPLGVFLTLTRKGGQSENLVV---YS 57 Query: 60 VLSFVVNILRSVPFIILMVALIPLSKSIMGTSIGVLGTIPALVIGAAPFFARLVETALRE 119 +L++V+NILRS+PFIIL+ +IP+++ ++GT+IG+ G I LV+ AP+ ARL+E+AL E Sbjct: 58 ILNWVINILRSLPFIILLFLMIPVTRFVVGTTIGIQGVIMPLVVFTAPYIARLMESALLE 117 Query: 120 VDRGVIEAAQGMGASTGQIVWRVLLPEARPGLLAGVTITIVTLVSYTAMSXXXXXXXXXD 179 VDRGVIEA Q MG ST +I+W V++ EAR G++ G+TI + L+ TAM+ Sbjct: 118 VDRGVIEAYQAMGISTPKIIWSVVIREARSGIVLGLTIATIGLIGATAMAGLVGAGGLGT 177 Query: 180 LAIRYGYYRYEKEVMIISVALMVILVQLLQMAGDRLVQHFTRK 222 +A +YG+ R+E VM ++ +++I+VQ LQ G+ L + + Sbjct: 178 IAYQYGFQRFEPTVMYTTIIILIIMVQALQSFGNFLSRRLKKD 220 >STM0512 [P] COG2011 ABC-type metal ion transport system, permease component Length = 219 Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 97/202 (48%), Positives = 142/202 (70%) Query: 21 TLRMLAYSGIFTIILGLPLGIVLYLWGRSNHFIIRSIYSVLSFVVNILRSVPFIILMVAL 80 T +ML+ S + I+ GLPLG ++++ R + R IY V S +VNI+RSVPF+IL+V L Sbjct: 15 TFQMLSISTVLAILGGLPLGFLIFVTDRHLFWQNRFIYLVASVLVNIIRSVPFVILLVLL 74 Query: 81 IPLSKSIMGTSIGVLGTIPALVIGAAPFFARLVETALREVDRGVIEAAQGMGASTGQIVW 140 +PL++ ++G +IG + L + A F+ARLV++ALREVD+G+IEAA GAS +I+ Sbjct: 75 LPLTQLLLGNTIGPIAASVPLSVAAIAFYARLVDSALREVDKGIIEAALAFGASPMRIIC 134 Query: 141 RVLLPEARPGLLAGVTITIVTLVSYTAMSXXXXXXXXXDLAIRYGYYRYEKEVMIISVAL 200 VLLPEA GLL G+TIT+V+L+ Y+AM+ DLAIRYGYYRYE EVM+++V Sbjct: 135 TVLLPEASAGLLRGLTITLVSLIGYSAMAGIVGGGGVGDLAIRYGYYRYETEVMVVTVVA 194 Query: 201 MVILVQLLQMAGDRLVQHFTRK 222 +++LVQ++QM GD L + ++ Sbjct: 195 LIVLVQVVQMLGDWLAKRADKR 216 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.329 0.143 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 14,757,318 Number of extensions: 579798 Number of successful extensions: 7932 Number of sequences better than 1.0e-05: 118 Number of HSP's gapped: 7999 Number of HSP's successfully gapped: 118 Length of query: 222 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 120 Effective length of database: 26,614,363 Effective search space: 3193723560 Effective search space used: 3193723560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 114 (48.5 bits)