BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0109.0015.p (338 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA5503 [P] COG1135 ABC-type metal ion transport system, ATPase c... 332 4e-91 HI0621.1 [E] COG0241 Histidinol phosphatase and related phosphat... 305 6e-83 lin0312 [P] COG1135 ABC-type metal ion transport system, ATPase ... 303 2e-82 STM0247 [P] COG1135 ABC-type metal ion transport system, ATPase ... 302 4e-82 lin2514 [P] COG1135 ABC-type metal ion transport system, ATPase ... 298 8e-81 >PA5503 [P] COG1135 ABC-type metal ion transport system, ATPase component Length = 335 Score = 332 bits (852), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 177/342 (51%), Positives = 229/342 (66%), Gaps = 13/342 (3%) Query: 1 LIELKGLTKVYGKGSKAAMALSGLNLSIKKGEIFGVIGHSGAGKSTLIRCINLLERPTEG 60 +IE + K Y + AL L+I+ G+IFG+IGHSGAGKSTL+R IN LE P+ G Sbjct: 1 MIEFHDVHKTYRVAGREIPALQPTRLNIQAGQIFGLIGHSGAGKSTLLRLINRLEEPSGG 60 Query: 61 EVWVDGVELTSLSQGQLQEQRRKIGMIFQHFNLLSSATVYDNIAFPLRLAGT-PKAQIER 119 + V+G ++T+L L+ R+++GMIFQHFNLLSS TV DNIA PLRLAG +A+++ Sbjct: 61 RILVEGEDVTALDAEGLRRFRQRVGMIFQHFNLLSSKTVADNIAMPLRLAGGFSRAEVDA 120 Query: 120 KXXXXXXXXXXXXHSRKYPAQLSGGQKQRVGVARALASDPDVLLCDEATSALDPQTTDSI 179 + H+RKYPAQLSGGQKQRVG+ARALA P +LLCDEATSALDPQTT S+ Sbjct: 121 RVSELLARVGLSDHARKYPAQLSGGQKQRVGIARALACRPSILLCDEATSALDPQTTASV 180 Query: 180 LRLLLDINRKFHLTIVLITHEMHVIQSICDRVAVIHGGGIVEQGEVADVFLKPQHEVTKD 239 L+LL +INR+ LTIVLITHEM VI+ +CD+VAV+ GG IVEQG+VADVFL PQH T+ Sbjct: 181 LQLLAEINRELKLTIVLITHEMDVIRRVCDQVAVMDGGAIVEQGDVADVFLHPQHPTTRR 240 Query: 240 FIRSENQHEGPLRVALEAVHDKYSKS----VKITFLGQKTYESTLSHVVRGTGVDFAILQ 295 F+ RV + HD ++ +++TF G+ TY L V R TGVD++IL Sbjct: 241 FVFEAE------RVDEDERHDDFAHVPGLILRLTFRGEATYAPLLGTVARQTGVDYSILS 294 Query: 296 GTISTIKDVPYGQLLVRFEGSAQAVEATLAELAAQGLDVEVF 337 G I IKD PYGQL + G +EA +++L A + VEV Sbjct: 295 GRIDRIKDTPYGQLTLALVGG--DLEAAMSQLNAADVHVEVL 334 >HI0621.1 [E] COG0241 Histidinol phosphatase and related phosphatases Length = 346 Score = 305 bits (781), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 24/342 (7%), Positives = 74/342 (21%), Gaps = 6/342 (1%) Query: 1 LIELKGLTKVYGKGSKAAMALSGLNLSIKKGEIFGVIGHSGAGKSTLIRCINLLERPTEG 60 + + + ++ + + + G + + P Sbjct: 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPE 60 Query: 61 EVWVDGVELTSLSQGQLQEQRRKIGMIFQHFNLLSSATVYDNIAFPLRLAGTPKAQIERK 120 + + + ++ I + + + + A + ++ Sbjct: 61 TQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKR 120 Query: 121 XXXXXXXXXXXXHSRKYPAQLSGGQKQRVGVARALASDPDVLLCDEATSALDPQTTDSIL 180 ++ A A++ + E A + Sbjct: 121 LQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSN 180 Query: 181 RLLLDINRKFHLTIVLITHEMHVIQSICDRVAVIHGGGIVEQGEVADVFLKPQHEVTKDF 240 + R HL + IQ+ + G+ E + V L + Sbjct: 181 ETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGT 240 Query: 241 IRSENQHEGPLRVALEAVHD--KYSKS---VKITFLGQKTYESTLSHVVRGTGVDFAILQ 295 + + + S + + F Q Sbjct: 241 LTGKYLNGAKPAG-ARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQ 299 Query: 296 GTISTIKDVPYGQLLVRFEGSAQAVEATLAELAAQGLDVEVF 337 +++ ++ + +E + LA +V+ Sbjct: 300 PFVASTLLGATTMDQLKTNIESLHLELSEDVLAEIEAVHQVY 341 >lin0312 [P] COG1135 ABC-type metal ion transport system, ATPase component Length = 338 Score = 303 bits (777), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 162/334 (48%), Positives = 218/334 (65%), Gaps = 8/334 (2%) Query: 1 LIELKGLTKVYGKGSKAAMALSGLNLSIKKGEIFGVIGHSGAGKSTLIRCINLLERPTEG 60 +IEL ++K + K A+ ++++++KGEIFGV+G+SGAGKSTL+RCINLLERP G Sbjct: 1 MIELHQVSKSFNVNGKTVEAVKNVSITVEKGEIFGVVGYSGAGKSTLVRCINLLERPDAG 60 Query: 61 EVWVDGVELTSLSQGQLQEQRRKIGMIFQHFNLLSSATVYDNIAFPLRLAGTPKAQIERK 120 +V +DG L++LS +L+ RRKIGMIFQ +NLL +ATVYDNIA PL+L G PK +IE + Sbjct: 61 QVLIDGKNLSTLSSKELRVARRKIGMIFQGYNLLKTATVYDNIAKPLKLEGVPKDEIEIR 120 Query: 121 XXXXXXXXXXXXHSRKYPAQLSGGQKQRVGVARALASDPDVLLCDEATSALDPQTTDSIL 180 YP+QLSGGQKQRV +ARALA +P++LL DEATSALDP+TT++IL Sbjct: 121 VNKYLSIVGLEDKRNNYPSQLSGGQKQRVAIARALAHEPEILLSDEATSALDPETTEAIL 180 Query: 181 RLLLDINRKFHLTIVLITHEMHVIQSICDRVAVIHGGGIVEQGEVADVFLKPQHEVTKDF 240 +LLL IN + +TI LITHE+ VIQ ICDRVAV+ G +VEQG V D+F K +H TK F Sbjct: 181 QLLLKINAELGITIFLITHELDVIQRICDRVAVMENGHLVEQGTVLDIFTKAKHATTKRF 240 Query: 241 IRSENQHEGPLRVALEAVHDKY---SKSVKITFLGQKTYESTLSHVVRGTGVDFAILQGT 297 + SE + P + + +KY K V + F+G + E L+ V R V +IL G Sbjct: 241 VGSEASFDIP-----QDLLEKYIATGKLVSLHFIGDEADEPALALVSRKFDVLPSILAGG 295 Query: 298 ISTIKDVPYGQLLVRFEGSAQAVEATLAELAAQG 331 I +K+ G+LLV +G +A L G Sbjct: 296 IDHLKNGTLGKLLVHLKGDEAEYSKAIAYLKESG 329 >STM0247 [P] COG1135 ABC-type metal ion transport system, ATPase component Length = 343 Score = 302 bits (774), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 163/340 (47%), Positives = 218/340 (64%), Gaps = 3/340 (0%) Query: 1 LIELKGLTKVYGKGSKAAMALSGLNLSIKKGEIFGVIGHSGAGKSTLIRCINLLERPTEG 60 +I+L +TKV+ +G++ AL+ ++L + G+I+GVIG SGAGKSTLIRC+NLLERPTEG Sbjct: 1 MIKLSNITKVFQQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 60 Query: 61 EVWVDGVELTSLSQGQLQEQRRKIGMIFQHFNLLSSATVYDNIAFPLRLAGTPKAQIERK 120 V V G ELT+LS+ +L + RR+IGMIFQHFNLLSS TV+ N+A PL L TPK +I+R+ Sbjct: 61 SVQVGGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKEEIKRR 120 Query: 121 XXXXXXXXXXXXHSRKYPAQLSGGQKQRVGVARALASDPDVLLCDEATSALDPQTTDSIL 180 YPA LSGGQKQRV +ARALAS+P VLLCDEATSALDP TT SIL Sbjct: 121 VTELLDLVGLGDKHDSYPANLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180 Query: 181 RLLLDINRKFHLTIVLITHEMHVIQSICDRVAVIHGGGIVEQGEVADVFLKPQHEVTKDF 240 LL DINR+ LTI+LITHEM V++ ICD VAVI G ++EQ V++VF P+ + + F Sbjct: 181 ELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKF 240 Query: 241 IRSENQHEGP--LRVALEAVHDKYS-KSVKITFLGQKTYESTLSHVVRGTGVDFAILQGT 297 I+S + P + L+A + S +++ F GQ LS R V+ I+ Sbjct: 241 IQSTLHLDIPEDYQARLKASPETDSVPMLRMEFTGQSVDAPLLSETARRFNVNNNIISAQ 300 Query: 298 ISTIKDVPYGQLLVRFEGSAQAVEATLAELAAQGLDVEVF 337 + V +G +L G+ + +A +A L + VEV Sbjct: 301 MDYAGGVKFGIMLTEMHGTQEETQAAIAWLQDHHVKVEVL 340 >lin2514 [P] COG1135 ABC-type metal ion transport system, ATPase component Length = 340 Score = 298 bits (763), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 155/342 (45%), Positives = 221/342 (64%), Gaps = 9/342 (2%) Query: 1 LIELKGLTKVYGKGSKAAMALSGLNLSIKKGEIFGVIGHSGAGKSTLIRCINLLERPTEG 60 +I L+ + K Y + +A+ ++L I++GEIFGV+G+SGAGKSTLIR N LE PTEG Sbjct: 1 MITLQNVVKEYTSRNNKVLAVDHVDLEIEQGEIFGVVGYSGAGKSTLIRMFNGLELPTEG 60 Query: 61 EVWVDGVELTSLSQGQLQEQRRKIGMIFQHFNLLSSATVYDNIAFPLRLAGTPKAQIERK 120 V VD + ++ + +L++ R++IGMIFQHFNLL S TV +NIAFPL +AG + + Sbjct: 61 SVEVDNLLISQIRGSKLRKARQQIGMIFQHFNLLWSRTVAENIAFPLEIAGVRGEKRRFR 120 Query: 121 XXXXXXXXXXXXHSRKYPAQLSGGQKQRVGVARALASDPDVLLCDEATSALDPQTTDSIL 180 YPA+LSGGQKQRVG+ARALA++P VLLCDEATSALDPQTTD +L Sbjct: 121 VNELIRLVGLEGKENAYPAELSGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDEVL 180 Query: 181 RLLLDINRKFHLTIVLITHEMHVIQSICDRVAVIHGGGIVEQGEVADVFLKPQHEVTKDF 240 LLLDIN++ +LTI++ITHEMHVI+ IC+RVAV+ G + E G+V DVF P+ +VT+ F Sbjct: 181 ELLLDINKRLNLTIIVITHEMHVIRKICNRVAVMENGKVAELGDVLDVFRHPKEKVTQRF 240 Query: 241 IRSENQHEGPLRVALEAVH---DKYS--KSVKITFLGQKTYESTLSHVVRGTGVDFAILQ 295 +R + E +H D Y+ K VK+ F+ + + +S V + V +L Sbjct: 241 VRQVTDSDE----TEELIHLLLDNYAEGKIVKLLFMSENATQPVISQVAKENDVMLNVLH 296 Query: 296 GTISTIKDVPYGQLLVRFEGSAQAVEATLAELAAQGLDVEVF 337 G ++ ++ YG L V+ G+ +A+EA+L +L ++ EV Sbjct: 297 GNLTQTQNGAYGTLYVQVLGTEEAIEASLTQLRQLKVETEVL 338 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,298,462 Number of extensions: 905263 Number of successful extensions: 8638 Number of sequences better than 1.0e-05: 2105 Number of HSP's gapped: 5699 Number of HSP's successfully gapped: 2365 Length of query: 338 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 231 Effective length of database: 26,037,693 Effective search space: 6014707083 Effective search space used: 6014707083 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 116 (49.3 bits)