BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0109.0011.p
         (114 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L195348 [OC] COG0526 Thiol-disulfide isomerase and thioredoxins        92   3e-19
lin1650 [OC] COG0526 Thiol-disulfide isomerase and thioredoxins        87   4e-18
SA1565 [OC] COG0526 Thiol-disulfide isomerase and thioredoxins         75   2e-14
SP1911 [OC] COG0526 Thiol-disulfide isomerase and thioredoxins         73   1e-13
BS_ydbP [OC] COG0526 Thiol-disulfide isomerase and thioredoxins        65   2e-11

>L195348 [OC] COG0526 Thiol-disulfide isomerase and thioredoxins
          Length = 105

 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 57/92 (61%), Gaps = 1/92 (1%)

Query: 14  IQSPRLTVAVFKADWCSDCKFIDPFMPDVEQKYTDRLTLVEVDVDAVGDVSQEQNILGIP 73
           ++ P  TV  F A WC DC FI P MP++E +  D    VEVD D   D++ E  I+GIP
Sbjct: 14  VKGPEKTVFFFTAGWCGDCNFIKPKMPEIEVENPD-FKFVEVDRDEYMDLAIEWGIMGIP 72

Query: 74  SFVAYSDGRELVRFVNKLRKSREEIEGFLDRA 105
           SFV   DG+E  R VNKLRK++EE+  FL  A
Sbjct: 73  SFVVIEDGKEKARLVNKLRKTKEEVNTFLASA 104


>lin1650 [OC] COG0526 Thiol-disulfide isomerase and thioredoxins
          Length = 301

 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 9/102 (8%), Positives = 20/102 (19%), Gaps = 2/102 (1%)

Query: 1   MDKITSPAEFQVAIQSPRLTVAVFKADWCSDCKFIDPFMPDVEQKYTDRLTLVEVDVDAV 60
           M    S   F  AI            +     K           ++   + +        
Sbjct: 1   MSIDKSYCGFI-AIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRI-VGIHTEGAYQA 58

Query: 61  GDVSQEQNILGIPSFVAYSDGRELVRFVNKLRKSREEIEGFL 102
             V      +     +     +     +  +      +EG  
Sbjct: 59  IYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR 100


>SA1565 [OC] COG0526 Thiol-disulfide isomerase and thioredoxins
          Length = 103

 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 58/102 (56%), Gaps = 3/102 (2%)

Query: 1   MDKITSPAEFQVAIQSPRLTVAVFKADWCSDCKFIDPFMPDVEQKYTDRLTLVEVDVDAV 60
           M ++ S  +F+   Q    TV  F A WC DC+ I+P +P++E +Y      V VD D  
Sbjct: 1   MKQLESEQQFESLKQGA--TVFEFTAGWCPDCRVIEPDLPELEARYP-MFDFVSVDRDKF 57

Query: 61  GDVSQEQNILGIPSFVAYSDGRELVRFVNKLRKSREEIEGFL 102
            D+  E  I+GIPSF+ Y +G  L  ++ K RKS E+I+ FL
Sbjct: 58  MDICIENGIMGIPSFLVYKNGELLGSYIGKERKSIEQIDAFL 99


>SP1911 [OC] COG0526 Thiol-disulfide isomerase and thioredoxins
          Length = 105

 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 59/102 (57%), Gaps = 1/102 (0%)

Query: 1   MDKITSPAEFQVAIQSPRLTVAVFKADWCSDCKFIDPFMPDVEQKYTDRLTLVEVDVDAV 60
           M +  S  E    ++     V +F ADWCSDC++I P +P++E+      T + +D D  
Sbjct: 1   MIQPASLEELASLVEKAGKKVFIFVADWCSDCRYIYPALPEIEET-NPEFTFIRMDRDQY 59

Query: 61  GDVSQEQNILGIPSFVAYSDGRELVRFVNKLRKSREEIEGFL 102
            D+++  ++ GIPS V     +E+ RFVN+ RKS+++I  FL
Sbjct: 60  MDLAKLWDVYGIPSLVVLEKDKEIGRFVNRDRKSKQQINDFL 101


>BS_ydbP [OC] COG0526 Thiol-disulfide isomerase and thioredoxins
          Length = 248

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 4/106 (3%), Positives = 18/106 (16%), Gaps = 1/106 (0%)

Query: 1   MDKITSPAEFQVAIQSPRLTVAVFKADWCSDCKFIDPFMPDVEQKYTDRLTLVEVDVDAV 60
           M+++T+                        + +                          +
Sbjct: 1   MNQLTAYTLRLGDNCLVLSQRLGEWCGHAPELEIDLALANIGLDLLGQA-RNFLSYAAEL 59

Query: 61  GDVSQEQNILGIPSFVAYSDGRELVRFVNKLRKSREEIEGFLDRAL 106
                E  +        +S+   + +       +           +
Sbjct: 60  AGEGDEDTLAFTRDERQFSNLLLVEQPNGNFADTIARQYFIDAWHV 105


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.322    0.138    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,009,641
Number of extensions: 318664
Number of successful extensions: 678
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 689
Number of HSP's successfully gapped: 34
Length of query: 114
Length of database: 38,378,431
Length adjustment: 81
Effective length of query: 33
Effective length of database: 29,036,377
Effective search space: 958200441
Effective search space used: 958200441
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)