BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0109.0005.p
         (381 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MJ1282.1 [NOU] COG1989 Type II secretory pathway, prepilin signa...    50   6e-06
MJ1282 [R] COG1800 Predicted transglutaminase-like proteases           50   6e-06

>MJ1282.1 [NOU] COG1989 Type II secretory pathway, prepilin signal peptidase
           PulO and related peptidases
          Length = 673

 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 4/86 (4%), Positives = 7/86 (8%), Gaps = 4/86 (4%)

Query: 239 ISPDIVGAAADIAGQAKGEEDKA--RRLYDWIGSRIAYDYGKAENYEQNRI-WHE-QTPQ 294
                             +        L      R  +               +  Q   
Sbjct: 167 CYGLYDAHLKACNVLDFDDLILLPTLLLQANEEVRKRWQNKIRYLLVDEYQDTNTSQYEL 226

Query: 295 DTFDTRLGVCIDYARLYAVMARSQGL 320
                                 S   
Sbjct: 227 VKLLVGSRARFTVVGDDDQSIYSWRG 252


>MJ1282 [R] COG1800 Predicted transglutaminase-like proteases
          Length = 252

 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 8/86 (9%), Positives = 19/86 (22%), Gaps = 4/86 (4%)

Query: 239 ISPDIVGAAADIAGQAKGEEDKA--RRLYDWIGSRIAYDYGKAENYEQNRI-WHE-QTPQ 294
                 G   DI       +  +    +     + +          EQ        Q  +
Sbjct: 167 DILSEAGCEVDIWRTTYYHQMPSHQAIIDWVTATGLRPWLQDLTESEQQLFLKRYHQMLE 226

Query: 295 DTFDTRLGVCIDYARLYAVMARSQGL 320
           + +  +    I  A     +   +  
Sbjct: 227 EQYPLQENGQILLAFPRLFIVARRME 252


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 22,144,865
Number of extensions: 784020
Number of successful extensions: 1394
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1402
Number of HSP's successfully gapped: 2
Length of query: 381
Length of database: 38,378,431
Length adjustment: 108
Effective length of query: 273
Effective length of database: 25,922,359
Effective search space: 7076804007
Effective search space used: 7076804007
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 117 (49.7 bits)