BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0106.0009.p (326 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2913 [P] COG0614 ABC-type Fe3+-hydroxamate transport system, p... 92 1e-18 FN0885 [P] COG0614 ABC-type Fe3+-hydroxamate transport system, p... 90 4e-18 Cgl1589 [P] COG0614 ABC-type Fe3+-hydroxamate transport system, ... 82 2e-15 BS_yvrC [P] COG0614 ABC-type Fe3+-hydroxamate transport system, ... 81 2e-15 BMEII0535 [P] COG0614 ABC-type Fe3+-hydroxamate transport system... 81 3e-15 >PA2913 [P] COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component Length = 323 Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/304 (23%), Positives = 130/304 (42%), Gaps = 60/304 (19%) Query: 29 YPLTIENYTNNGEGTEWKAKPQTFDKAPEKVVANTQGAAELLIKLGLTDKMVG---VAAL 85 YPL++ + TF++AP + V++ E+++ LGL +MVG ++ Sbjct: 26 YPLSVRSCERE----------VTFERAPSRAVSHDINLTEMMVALGLQTRMVGYTGISGW 75 Query: 86 YGAGDPAVQEEFKKVPVISKEYASKELVVGASPDLVLGRSDLFADADWGSG-------TV 138 + DP + K +P + Y + E ++ D F A WG G T Sbjct: 76 WKNADPGLIAALKPLPELVARYPTAETLLDVDAD--------FFFAGWGYGMRVGGDLTP 127 Query: 139 EGLNELGIKTFVQNTSV------KGATLDSLYKDIEQLGQIFDVQENAAAYIAELKERAQ 192 L LG+K + + S + A+LD LY+D+ LG+IFDV+ A +A L+ R + Sbjct: 128 ASLEPLGVKVYELSESCAQIGEPRRASLDELYRDLRNLGRIFDVEPRAERLVASLQARIE 187 Query: 193 SLQDKAAASGEKTFAYVSDGGNGAIAVYSGNTDTFAGDVLGLLGLKNSFGTITG------ 246 + A+ E ++ D SG F G LG+ + G Sbjct: 188 RARAGIPANAEAPRVFLYD---------SGEDRPFTS---GRLGMPQALIEAAGGRSVTD 235 Query: 247 -------EISKEQLIATNPDVLLLSVYTGGIDPEKTLKAFYADPSLQSLKAVKNKTIYTI 299 +++ E ++A +P V+++ Y G + + +P+L+SL A++ + + Sbjct: 236 DVAASWTQVNWESVVARDPQVIVIVDY-GETSAAQKQRFLEENPALRSLTAIRERRFIVL 294 Query: 300 DFNQ 303 +NQ Sbjct: 295 PYNQ 298 >FN0885 [P] COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component Length = 286 Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 124/251 (49%), Gaps = 11/251 (4%) Query: 54 KAPEKVVANTQGAAELLIKLGLTDKMVGVAALYGAGDPAVQEEFKKVPVISKEYASKELV 113 K P++ V+ + E+L+ +G +MVG A P+++E++ K+PV+S + +KE Sbjct: 18 KVPQRAVSAAHFSTEILLSIGAEKQMVGTAYPDNEILPSLKEKYDKIPVLSMKNPTKEQF 77 Query: 114 VGASPDLVLGRSDLFADADWGSGTVEGLNELGIKTFVQNTSVKGATLDSLYKDIEQLGQI 173 PD + G D + G ++ L + G++ ++ S+ + ++ +++DI G+I Sbjct: 78 YAVKPDFLTGWDSTVLDKNLGP--IKELEKNGVQVYIMK-SLHSSDINLVFEDILTYGKI 134 Query: 174 FDVQENAAAYIAELKERAQSLQDKAAASGEKTFAYVSDGGNGAIAVYSGNTDTFAGDVLG 233 F+++ NA + ++K ++Q + + K F Y D G+ A V G D+ ++ Sbjct: 135 FNLENNAKKVVGKMKSDLAAVQKQLPKNKVKVFTY--DSGDKAPFVVGG--DSIGNTIIT 190 Query: 234 LLGLKNSFGTITGEISK---EQLIATNPDVLLLSVYTGGIDPEKTLKAFYADPSLQSLKA 290 L G N F I + E+++ NPD++++ Y G E +K ++ LKA Sbjct: 191 LAGGDNIFKDIKKAWADGNWEKVLVENPDIIVIIDY-GDQSAESKIKFLKEKSPIKDLKA 249 Query: 291 VKNKTIYTIDF 301 VKN I+ Sbjct: 250 VKNNKFVVIEL 260 >Cgl1589 [P] COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component Length = 282 Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 103/227 (45%), Gaps = 24/227 (10%) Query: 52 FDKAPEKVVANTQGAAELLIKLGLTDKMVGVAALYGAG--DPAVQEEFKKVPVISKE--- 106 FD P + A L LG+ D++V A + AG D + E +P +S + Sbjct: 4 FDSPPSHIALMKSAAVPTLDALGVLDRVVTKAGAFPAGYYDADLSERVTDIPTLSNKIDA 63 Query: 107 ----YASKELVVGASPDLVLGRSDLFADADWGSGTVEGLNELGIKTFVQNTSVKG-ATLD 161 SKE+VV A+PD+V G +D A S + + E F S+ G + D Sbjct: 64 SGHVLISKEVVVAANPDIVFGETDTINRASMASSNIPVVEE---PAFCG--SIDGDVSFD 118 Query: 162 SLYKDIEQLGQIFDVQENAAAYIAELKERAQSLQDKAAASGEKTFA--YVSDGGNGAIAV 219 ++ I G IFD A AYIA LKER + + SG KT A Y + GG Sbjct: 119 DVWSQISTYGTIFDRSTEADAYIATLKERVSEVSSRVTDSG-KTVAVLYPTIGGG---VT 174 Query: 220 YSGNTDTFAGDVLGLLGLKNSFGTITG---EISKEQLIATNPDVLLL 263 Y+ + A ++ GL N F + E++ E+LI+ NPD +++ Sbjct: 175 YAYGRGSMANPLVAEAGLTNVFADQSERVFEVTAEELISRNPDYIIV 221 >BS_yvrC [P] COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component Length = 314 Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 80/302 (26%), Positives = 136/302 (45%), Gaps = 39/302 (12%) Query: 28 VYPLTIENYTNNGEGTEWKAKPQTFDKAPEKVVANTQGAAELLIKLGLTDKMVGVAALYG 87 V+P+TI++ +N T K P+K+V+ E+ LGL DK+VGV Sbjct: 38 VFPVTIDDASNQD---------VTIKKEPKKIVSLMPSNTEITYALGLGDKVVGVTT--- 85 Query: 88 AGDPAVQEEFKKVPVISKEYASKELVVGASPDLVLGR-SDLFADADWGSGTVEGLNELGI 146 + +E KKV + + E V+ PDLVL S + A AD ++ L + GI Sbjct: 86 --NDTYPKEVKKVEKVGDMNVNVEKVISLKPDLVLAHESSMSASAD----AIKQLKDAGI 139 Query: 147 KTFVQNTSVKGATLDSLYKDIEQLGQIFDVQENAAAYIAELKERAQSLQDKA---AASGE 203 N + + +YK IE +G+ ++ A + +K + +Q+KA + E Sbjct: 140 TVLTVNDA---QSFSEVYKSIEMIGEAGGAEKKADQLVKSMKSDLKDIQEKAKTISKDEE 196 Query: 204 KT-FAYVSDGGNGAIAVYSGNTDTFAGDVLGLLGLKNSFGTITG--EISKEQLIATNPDV 260 K+ F VS + +Y+ DTF ++L ++ KN+ TG +++ E ++ NPD Sbjct: 197 KSVFIEVSPDPD----IYTTGKDTFMNEMLNVIHAKNAAADQTGWVQMTDEAIVKLNPDA 252 Query: 261 LLLSVYTGGIDPEKTLKAFYADPSLQSLKAVKNKTIYTIDFNQFWGYSYSIFDGAEKLVS 320 + V T G+ KA + AVK+ +Y +D + + +G E+L Sbjct: 253 I---VTTDGV----KAKAVEKRDGWSEINAVKHHRVYDVDPDLVTRSGPRLIEGVEELAE 305 Query: 321 EI 322 I Sbjct: 306 SI 307 >BMEII0535 [P] COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component Length = 344 Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 79/324 (24%), Positives = 135/324 (41%), Gaps = 40/324 (12%) Query: 26 KTVYPLTIENYTNNGEGTEWKAKPQTFDKAPEKVVANTQGAAELLIKLGLTDKMVGVAAL 85 +T YPLT++N + TF AP++ VA Q +AE+L LGL D++VG A Sbjct: 31 ETRYPLTLKNC----------GREVTFHHAPQRAVAIGQSSAEILYNLGLGDRVVGTAVW 80 Query: 86 YGAGDPAVQEEFKKVPVISKEYASKELVVGASPDLVLGRSDLFADADWGSGTVEGLNELG 145 +G +E +V ++ S E V+ D+V + + E ELG Sbjct: 81 FGPVMKGYEEVNARVKRLADNDPSLESVLAQKSDMVAAQFQWHVGPEGIVAKPEQFEELG 140 Query: 146 IKTFVQNTSVKGA--------------TLDSLYKDIEQLGQIFDVQENAAAYIAELKERA 191 I + G T+D +Y++I +L +IF+VQ+ IA+LK R Sbjct: 141 IPVYTAPADCIGKVNSGKGDGVRHTVFTMDLIYQEIRELAEIFNVQDRGEKVIADLKARE 200 Query: 192 QSLQDK-AAASGEKTFAYVSDGGNGAIAVYSGNTDTFAGDVLGLLGLKNSFGTIT--GEI 248 ++ + K A+A+G + I Y + +L LG++N G+ + Sbjct: 201 EAARKKIASANGRLSAVVWFSSAQIDIDPYVAGKNGAPAYILSALGIRNVIGSEEEWPTV 260 Query: 249 SKEQLIATNPDVLLLSVYTGGIDPEK--------TLKAFYADPSLQSLKAVKNKTIYTID 300 E + ++P +++ G +D + K DP + AVK+ ++ +D Sbjct: 261 GWETIAKSDPTMII----AGKMDRRRYPADDIAVKRKFLETDPVASLMPAVKDGHVFDMD 316 Query: 301 FNQFWGYSYSIFDGAEKLVSEITA 324 Q + +G E L I A Sbjct: 317 -AQAMNPTIRTIEGIETLADAIAA 339 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.311 0.131 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 24,612,535 Number of extensions: 1051506 Number of successful extensions: 2215 Number of sequences better than 1.0e-05: 22 Number of HSP's gapped: 2193 Number of HSP's successfully gapped: 22 Length of query: 326 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 219 Effective length of database: 26,037,693 Effective search space: 5702254767 Effective search space used: 5702254767 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 116 (49.3 bits)