BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0106.0003.p (955 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0503 [L] COG0178 Excinuclease ATPase subunit 829 0.0 BH3594 [L] COG0178 Excinuclease ATPase subunit 790 0.0 DR1771 [L] COG0178 Excinuclease ATPase subunit 769 0.0 lin2631 [L] COG0178 Excinuclease ATPase subunit 761 0.0 RSc0420 [L] COG0178 Excinuclease ATPase subunit 745 0.0 >CAC0503 [L] COG0178 Excinuclease ATPase subunit Length = 939 Score = 829 bits (2142), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/954 (43%), Positives = 635/954 (66%), Gaps = 16/954 (1%) Query: 3 VRTTIEISGAKQNNLKNISVEIPRDQLTVITGVSGSGKSSLAFDVIYGEGQRRFLDSIST 62 ++ I I GAK +NLKN+ + +PR++ V TG+SGSGKSSLAFD +Y EGQRR+++S+S+ Sbjct: 1 MKDKIVIKGAKVHNLKNVDLTVPRNEFVVFTGLSGSGKSSLAFDTLYAEGQRRYMESLSS 60 Query: 63 FAKSRISQLKKAKVDYVRGLSPVIAIEQKKSNNNPRSTVGTVTDINDYLRLLYATAGVGR 122 +A+ + Q+ K V+Y+ GLSP I+I+QK + NPRSTVGTVT+I DYLRLLYA GV Sbjct: 61 YARQFLGQMDKPNVEYIEGLSPAISIDQKTTGRNPRSTVGTVTEIYDYLRLLYAKIGVPH 120 Query: 123 CPECGHSLKQLSAAQIAERISSLPSGTVVELRAPVYKVFGEEYSFTFQQLRDKGYKNLLV 182 CP CG + Q + QI + + L T +++ APV + E++ ++ G+ + + Sbjct: 121 CPNCGKEISQQTVDQIVDSVMKLEERTKIQVLAPVVRGRKGEHTKLIAHIKKSGFVRVRI 180 Query: 183 DGEPFSLAEKR-ELDETREYHIEMVIDRFQLKKDTYIQLTKSIEAAMLALEEDIMIKVEV 241 DGE + + E +LD+ +++HIE ++DR +K+ +LT S+E A L L E +++ + V Sbjct: 181 DGEVYEIDEDEIKLDKNKKHHIEALVDRIVIKQGVEGRLTDSVETA-LKLAEGLVV-INV 238 Query: 242 PGGVDPSFYQEFGCPEHHFFLCDMQPFHFSFNSPVSACHTCLGVGMSYVVEPRFLVVAPE 301 G D F + F CP+ + ++ P FSFN+P C C G+G ++ ++ Sbjct: 239 MGKEDMLFSENFACPDCGISIGEISPSMFSFNAPFGKCDVCDGIGTLLEIDEDLVIPDKS 298 Query: 302 KSISKGALKNTVFNPAGKDSYRSVLMYSLSQKYHFSLDTPFCDLPKEIHDILFYGTKGEV 361 KSI +GA+ ++S+ ++ +LS+KY ++ P D ++ +IL YG Sbjct: 299 KSIMEGAIAPWGEGRLKEESWTFGVLKALSKKYKLDINKPIEDYDEKTLNILLYGA---- 354 Query: 362 LPMLQPPNSTKKNWMIGRDRPFWGFVHEMESWYKHYIRKNSTSEAFEPAFIKDCMIEKIC 421 P + N K + + + + G +++M+ + Y+ NS + + I++ M C Sbjct: 355 -PDVLKVNYVKDSQEMVFNHHYEGIINQMK---RRYMESNSD---YIKSEIENYMSNNPC 407 Query: 422 PECSGARLKKQRLQVTLGEENIDQLSRKQLPELLHSLETLTFEAEVQDVASSIIQEIRTR 481 P+C GARLKK+ L +T+G +NI + + E + ++TL + + +++ I++EI++R Sbjct: 408 PKCKGARLKKEVLAITVGNKNIFEFCSMPIREEVSFIDTLELSNKHKIISAQIVKEIKSR 467 Query: 482 VSLLIDIGLHYISLNRRSDSISGGEMQRIKMSTQISSELMGMLYVMDEPSIGLHPRDSSR 541 + LI++GL Y++L R + ++SGGE QRI+++TQI S L+G+LY++DEPSIGLH RD+ R Sbjct: 468 LEFLINVGLDYLNLAREARTLSGGESQRIRLATQIGSSLVGVLYILDEPSIGLHQRDNDR 527 Query: 542 VIDTMKKLRDIGNTVIVVEHDMDTIQSADXXXXXXXXXXXXXXXVVACGTMEDIMNEPQS 601 +I TMK L+DIGNT+IVVEHD DTI++AD ++A G++EDI N +S Sbjct: 528 LIATMKNLKDIGNTLIVVEHDEDTIKAADFIVDIGPGAGEHGGEIIAAGSLEDIKNCKES 587 Query: 602 VTGQYLSGKAHIPVPGKRRSLGDDFLSIQGARENNLKNVDLDIPLGVFICITGVSGSGKS 661 +TGQYL+G I VP +RR G +F+ I GA+ENNLKNV++ P+G+F C+TGVSGSGKS Sbjct: 588 ITGQYLTGVKKIEVPKERREAGKNFIEIVGAKENNLKNVNVKFPVGLFTCVTGVSGSGKS 647 Query: 662 SLINEILFKQLKIDMTAARMVAGEHDFLFGADLLNNVINIDQTPIGRNSKSNPATYIGIY 721 +L+NEIL+K L + +++ G++ + G + ++ +I+I+Q+PIGR +SNPATY G++ Sbjct: 648 TLVNEILYKALNKKINRSKLNPGKYKSINGIENIDKIIDINQSPIGRTPRSNPATYTGVF 707 Query: 722 DKIRDLFASQPEAADRGYQAIDFSLTHAGGTRCEQCAGDGVIVTNLQFMADIETICPVCK 781 D IR+L+AS EA RGY+A FS GG RCE C GDG++ +QF++D+ C VCK Sbjct: 708 DIIRELYASTKEAKLRGYKAGRFSFNVKGG-RCEACKGDGIVRIEMQFLSDVYVPCDVCK 766 Query: 782 GQRFSEEGLEIKVHGKSIADVLEMTVEEAREFFSDHKYLKHKLEIMDELGLGYMRLGQSS 841 G+R++ E LEIK K+I D+L MTVE+A +FF + +K+KL+ + ++GLGY+RLGQ S Sbjct: 767 GKRYNRETLEIKYKDKNIDDLLNMTVEDALKFFENLPRIKNKLQTLADVGLGYVRLGQPS 826 Query: 842 TTLSGGEAQRVKLAYELSKIKRGARNLYILDEPTTGLHLSDIQKLLLSLGRLVDKGHTVI 901 T LSGGEAQR+KLAYELSK G + LYILDEPTTGLH D++KL+ L RL D G+TV+ Sbjct: 827 TQLSGGEAQRIKLAYELSKRSTG-KTLYILDEPTTGLHTDDVKKLISILQRLTDMGNTVV 885 Query: 902 VVEHHLDVMKSADYIIDMGPEGGHQGGYVVAEGTPEQVAQVEASHTGRFLRTVL 955 V+EH+LDV+K ADYI+D+GPEGG +GG ++ GTPEQVAQ +S+TG++L+ +L Sbjct: 886 VIEHNLDVIKCADYIVDLGPEGGEKGGTILCSGTPEQVAQNSSSYTGQYLKKML 939 >BH3594 [L] COG0178 Excinuclease ATPase subunit Length = 957 Score = 790 bits (2041), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/953 (43%), Positives = 618/953 (64%), Gaps = 22/953 (2%) Query: 6 TIEISGAKQNNLKNISVEIPRDQLTVITGVSGSGKSSLAFDVIYGEGQRRFLDSISTFAK 65 I + GA+ +NLKNI V IPRD+L V+TG+SGSGKSSLAFD IY EGQRR+++S+S +A+ Sbjct: 5 NIVVKGARSHNLKNIDVTIPRDKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYAR 64 Query: 66 SRISQLKKAKVDYVRGLSPVIAIEQKKSNNNPRSTVGTVTDINDYLRLLYATAGVGRCPE 125 + Q+ K VD + GLSP I+I+QK ++ NPRSTVGTVT+I DYLRLLYA G CP+ Sbjct: 65 QFLGQMDKPDVDSIEGLSPAISIDQKTTSRNPRSTVGTVTEIFDYLRLLYARIGKPVCPK 124 Query: 126 CGHSLKQLSAAQIAERISSLPSGTVVELRAPVYKVFGEEYSFTFQQLRDKGYKNLLVDGE 185 G + + Q+ +RI S T +++ AP+ + + ++ +G+ + +DGE Sbjct: 125 HGIEISSQTVQQMVDRILSYEERTKLQILAPLVSGRKGTHVKVLEDIKKQGFVRVRIDGE 184 Query: 186 PFSLAEKRELDETREYHIEMVIDRFQLKKDTYIQLTKSIEAAM-LALEEDIMIKVEVPGG 244 +AE+ ELD+ +++ IE+VIDR +K+ +L S+E A+ LA D + V++ G Sbjct: 185 MREVAEEIELDKNKKHTIEVVIDRIVVKEGIETRLADSLETALQLA---DGRVVVDIIGK 241 Query: 245 VDPSFYQEFGCPEHHFFLCDMQPFHFSFNSPVSACHTCLGVGMSYVVEPRFLVVAPEKSI 304 + F Q CP+ F + +++P FSFNSP AC TC G+G+ V+ ++ +++ Sbjct: 242 EELLFSQHHACPQCGFSIPELEPRMFSFNSPFGACPTCDGLGVKLEVDLELVIPDRSRTL 301 Query: 305 SKGALKNTVFNPAGKDSYRSVLMYSLSQKYHFSLDTPFCDLPKEIHDILFYGTKGEVLPM 364 S+ A+ + P Y +L ++ Y +DTP LP + + YG+ E + Sbjct: 302 SENAI--APWEPISSQYYPQML-EAVCNHYGIDMDTPVEQLPDHQLEKILYGSGHEKIFF 358 Query: 365 LQPPN--STKKNWMIGRDRPFWGFVHEMESWYKHYIRKNSTSEAFEPAFIKDCMIEKICP 422 + ++N ++ F G + ++ Y + TS + ++ M +K CP Sbjct: 359 RYENDLGQVRENEIL-----FEGVIPNVKRRY------HETSSDYIRDQLEAYMAQKACP 407 Query: 423 ECSGARLKKQRLQVTLGEENIDQLSRKQLPELLHSLETLTFEAEVQDVASSIIQEIRTRV 482 C G RLKK+ L V +G +++ ++++ + E E+L + +A I++EI R+ Sbjct: 408 TCKGHRLKKEALAVLIGGKHLGEVTKLSIKEAKTFFESLELSKKDFSIARLILKEINDRL 467 Query: 483 SLLIDIGLHYISLNRRSDSISGGEMQRIKMSTQISSELMGMLYVMDEPSIGLHPRDSSRV 542 L+++GL Y++L+R + ++SGGE QRI+++TQI S LMG+LY++DEPSIGLH RD+ R+ Sbjct: 468 GFLMNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSSLMGVLYILDEPSIGLHQRDNDRL 527 Query: 543 IDTMKKLRDIGNTVIVVEHDMDTIQSADXXXXXXXXXXXXXXXVVACGTMEDIMNEPQSV 602 I T+ +RD+GNT+IVVEHD DT+ +AD V A G+ E+IMN+ +S+ Sbjct: 528 ISTLAHMRDLGNTLIVVEHDEDTMLAADYIIDIGPGAGVHGGQVTAAGSPEEIMNDAKSL 587 Query: 603 TGQYLSGKAHIPVPGKRRSLGDDFLSIQGARENNLKNVDLDIPLGVFICITGVSGSGKSS 662 TGQYLSGK IP+P +RR +++GA ENNLK V+++ PLGVFI +TGVSGSGKS+ Sbjct: 588 TGQYLSGKKFIPIPSERRQPNGRSFTVKGASENNLKQVNVEFPLGVFIAVTGVSGSGKST 647 Query: 663 LINEILFKQLKIDMTAARMVAGEHDFLFGADLLNNVINIDQTPIGRNSKSNPATYIGIYD 722 LINEI+ K L + A+ G+H + G + ++ VI+IDQ+PIGR +SNPATY G++D Sbjct: 648 LINEIVHKALAQKLHRAKDKPGKHKEIVGIEHVDKVIDIDQSPIGRTPRSNPATYTGVFD 707 Query: 723 KIRDLFASQPEAADRGYQAIDFSLTHAGGTRCEQCAGDGVIVTNLQFMADIETICPVCKG 782 IRD+FA EA RGY+ FS GG RCE C GDG+I + F+ D+ C VC G Sbjct: 708 DIRDVFAMTNEAKVRGYKKGRFSFNVKGG-RCEACRGDGIIKIEMHFLPDVYVPCEVCHG 766 Query: 783 QRFSEEGLEIKVHGKSIADVLEMTVEEAREFFSDHKYLKHKLEIMDELGLGYMRLGQSST 842 +R++ E L+I GK+IADVL+MTVEEA EFF++ +K K++ + ++GLGY++LGQ +T Sbjct: 767 KRYNRETLDITYKGKTIADVLDMTVEEALEFFTNIPRIKRKIQTLVDVGLGYIKLGQPAT 826 Query: 843 TLSGGEAQRVKLAYELSKIKRGARNLYILDEPTTGLHLSDIQKLLLSLGRLVDKGHTVIV 902 TLSGGEAQRVKLA +L K G + LYILDEPTTGLH+ DI +LL L R+VD G TV+V Sbjct: 827 TLSGGEAQRVKLASQLHKRATG-KTLYILDEPTTGLHVDDIDRLLKVLQRIVDNGDTVLV 885 Query: 903 VEHHLDVMKSADYIIDMGPEGGHQGGYVVAEGTPEQVAQVEASHTGRFLRTVL 955 +EH+LDV+K+ D+IID+GPEGG +GG +VA+GTPE+V +VE S+TG++LR +L Sbjct: 886 IEHNLDVIKTVDHIIDLGPEGGDKGGTIVAQGTPEEVVEVEGSYTGKYLRPIL 938 Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 67/115 (58%), Gaps = 7/115 (6%) Query: 622 LGDDFLSIQGARENNLKNVDLDIPLGVFICITGVSGSGKSSLINEILF----KQLKIDMT 677 +G D + ++GAR +NLKN+D+ IP + +TG+SGSGKSSL + ++ ++ ++ Sbjct: 1 MGLDNIVVKGARSHNLKNIDVTIPRDKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLS 60 Query: 678 A-ARMVAGEHDF--LFGADLLNNVINIDQTPIGRNSKSNPATYIGIYDKIRDLFA 729 A AR G+ D + + L+ I+IDQ RN +S T I+D +R L+A Sbjct: 61 AYARQFLGQMDKPDVDSIEGLSPAISIDQKTTSRNPRSTVGTVTEIFDYLRLLYA 115 >DR1771 [L] COG0178 Excinuclease ATPase subunit Length = 1016 Score = 770 bits (1987), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/987 (42%), Positives = 609/987 (61%), Gaps = 57/987 (5%) Query: 9 ISGAKQNNLKNISVEIPRDQLTVITGVSGSGKSSLAFDVIYGEGQRRFLDSISTFAKSRI 68 + GA+++NLK+I+VE+PRD+ VITGVSGSGKS+LAFD IY EGQRR+++S+S +A+ + Sbjct: 7 VRGAREHNLKDITVELPRDRFVVITGVSGSGKSTLAFDTIYAEGQRRYVESLSAYARQFL 66 Query: 69 SQLKKAKVDYVRGLSPVIAIEQKKSNNNPRSTVGTVTDINDYLRLLYATAGVGRCPECGH 128 ++K VD + GLSP I+I+QK +++NPRSTVGTVT+I+DYLRLLYA G CP CG Sbjct: 67 GLMEKPDVDSITGLSPAISIDQKTTSHNPRSTVGTVTEIHDYLRLLYARVGTPYCPICGR 126 Query: 129 SLKQLSAAQIAERI-SSLPSGTVVELRAPVYKVFGEEYSFTFQQLRDKGYKNLLVDGEPF 187 +++ S +++ +R+ + P + L AP + EY F LR +GY + VDG + Sbjct: 127 KIEKQSPSEVTDRLLAGFPDKRAI-LLAPAVRGRKGEYKKLFADLRREGYARVRVDGTLY 185 Query: 188 SL--AEKRELDETREYHIEMVIDRFQLKKDTYIQLTKSIEAAMLALEEDIMIKVEVP--- 242 L AEK +L++ ++ +++VIDR L++ ++ +S+E + E +++V +P Sbjct: 186 ELEEAEKLKLEKFEKHDVDIVIDRLTLRESDRSRIAESVELGIRRGEG--LLRVLLPDAG 243 Query: 243 --GGVDPSFYQE-FGCPEHHFFLCDMQPFHFSFNSPVSACHTCLGVGMSYVVEPRFLVVA 299 GG Y E F CPEH L +++P FSFNSP AC C G+G P ++ Sbjct: 244 EDGGAHEELYSEKFACPEHGSVLEELEPRSFSFNSPYGACGDCAGIGAKQEFSPE-RIID 302 Query: 300 PEKSISKGALKNTVFNPAGKDSYRSVLMYSLSQKYHFSLDTPFCDLPKEIHDILFYGTKG 359 + SI+ GA+ A Y + +L++ F L TP+ DLP + + +G G Sbjct: 303 EKLSIAGGAIIPWTKKGADAGIYYWDKLKALAEHLDFDLKTPWKDLPAKAQKAVLHG-PG 361 Query: 360 EVLPMLQPPNSTKKNWMIGRDRPFWGFVHEMESWYKHYIRKNSTSEAFEPAFIKDCMIEK 419 E ++ + + F G + +E Y T F +++ M + Sbjct: 362 EAFEVVYRRGGKETMRFMTE---FEGVITNLERRYA------DTESEFMRERLEELMELR 412 Query: 420 ICPECSGARLKKQRLQVTLGEENIDQLS------------RKQLPELLHSL--------- 458 CP C G R K + L V +G NI Q S + Q EL H+ Sbjct: 413 PCPTCGGTRYKPEILAVRVGGLNISQTSGMSVLDADAFFQQLQEGELDHAAIEPFLKRHT 472 Query: 459 -------ETLTFEAEV----QDVASSIIQEIRTRVSLLIDIGLHYISLNRRSDSISGGEM 507 L +E ++ VA+ I++ IRTR+ L+D+GL Y+SL+R ++++SGGE Sbjct: 473 GGTAKAHGPLHYEYDLGTFGAAVAAPILRAIRTRLKFLVDVGLDYLSLDRTANTLSGGEA 532 Query: 508 QRIKMSTQISSELMGMLYVMDEPSIGLHPRDSSRVIDTMKKLRDIGNTVIVVEHDMDTIQ 567 QRI+++TQ+ S L G+LYV+DEPSIGLHP+D+ R+I T+K LRD+GN+++VVEHD DT+ Sbjct: 533 QRIRLATQVGSGLTGVLYVLDEPSIGLHPKDNGRLIGTLKNLRDLGNSLLVVEHDEDTML 592 Query: 568 SADXXXXXXXXXXXXXXXVVACGTMEDIMNEPQSVTGQYLSGKAHIPVPGKRRSLGDDFL 627 AD V+A GT E + + S+TG+YL G+ I VP +RR FL Sbjct: 593 EADYLIDMGPGAGVHGGEVIASGTPEQVKQDKNSLTGKYLRGEMKIEVPAERRPGNGKFL 652 Query: 628 SIQGARENNLKNVDLDIPLGVFICITGVSGSGKSSLINEILFKQLKIDMTAARMVAGEHD 687 + GAR+NNL++VD+ IPLG +TG SGSGKS+LI++IL L ++ A+ G +D Sbjct: 653 KVFGARQNNLQDVDVSIPLGTMTVVTGPSGSGKSTLIHDILHATLARELNGAKTTPGLYD 712 Query: 688 FLFGADLLNNVINIDQTPIGRNSKSNPATYIGIYDKIRDLFASQPEAADRGYQAIDFSLT 747 + G + L+ VI IDQ+PIGR +SNPATY G++ +IRDLF PEA RGYQA FS Sbjct: 713 RIEGMEQLDKVIEIDQSPIGRTPRSNPATYTGVFTEIRDLFTRTPEARRRGYQAGRFSFN 772 Query: 748 HAGGTRCEQCAGDGVIVTNLQFMADIETICPVCKGQRFSEEGLEIKVHGKSIADVLEMTV 807 GG RCE C GDGV+ + F+ DI C VC G R++ E LE+K + K+IADVL++TV Sbjct: 773 VKGG-RCEHCKGDGVMKIEMNFLPDIYVPCEVCHGARYNRETLEVKYNHKTIADVLDLTV 831 Query: 808 EEAREFFSDHKYLKHKLEIMDELGLGYMRLGQSSTTLSGGEAQRVKLAYELSKIKRGARN 867 E+A EFF ++ K++++ ++GLGYM++GQ STTLSGGEAQR+KLA ELSK G R Sbjct: 832 EDAHEFFEAIPTIERKMQLLLDVGLGYMKIGQPSTTLSGGEAQRIKLATELSKRATG-RT 890 Query: 868 LYILDEPTTGLHLSDIQKLLLSLGRLVDKGHTVIVVEHHLDVMKSADYIIDMGPEGGHQG 927 +YILDEPTTGLH D++KL+ L RL + G+T++++EH+LDVMKSADY+ID+GPEGG +G Sbjct: 891 IYILDEPTTGLHFEDVRKLMDVLQRLAEGGNTLVIIEHNLDVMKSADYLIDLGPEGGVRG 950 Query: 928 GYVVAEGTPEQVAQVEASHTGRFLRTV 954 G VVA GTPE+VA S+TG +LR V Sbjct: 951 GTVVAVGTPEEVAAHPTSYTGEYLRKV 977 Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 14/121 (11%) Query: 7 IEISGAKQNNLKNISVEIPRDQLTVITGVSGSGKSSLAFDVIYGEGQRRFLDSISTFA-K 65 +++ GA+QNNL+++ V IP +TV+TG SGSGKS+L D+++ R + +T Sbjct: 652 LKVFGARQNNLQDVDVSIPLGTMTVVTGPSGSGKSTLIHDILHATLARELNGAKTTPGLY 711 Query: 66 SRISQLKKAKVDYVRGLSPVIAIEQKKSNNNPRSTVGTVTDINDYLRLLYATAGVGRCPE 125 RI +++ L VI I+Q PRS T T + +R L+ R PE Sbjct: 712 DRIEGMEQ--------LDKVIEIDQSPIGRTPRSNPATYTGVFTEIRDLFT-----RTPE 758 Query: 126 C 126 Sbjct: 759 A 759 Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 13/115 (11%) Query: 625 DFLSIQGARENNLKNVDLDIPLGVFICITGVSGSGKSSLINEILF----KQLKIDMTA-A 679 D L ++GARE+NLK++ +++P F+ ITGVSGSGKS+L + ++ ++ ++A A Sbjct: 3 DKLIVRGAREHNLKDITVELPRDRFVVITGVSGSGKSTLAFDTIYAEGQRRYVESLSAYA 62 Query: 680 RMVAG-----EHDFLFGADLLNNVINIDQTPIGRNSKSNPATYIGIYDKIRDLFA 729 R G + D + G L+ I+IDQ N +S T I+D +R L+A Sbjct: 63 RQFLGLMEKPDVDSITG---LSPAISIDQKTTSHNPRSTVGTVTEIHDYLRLLYA 114 >lin2631 [L] COG0178 Excinuclease ATPase subunit Length = 956 Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/956 (44%), Positives = 608/956 (63%), Gaps = 23/956 (2%) Query: 4 RTTIEISGAKQNNLKNISVEIPRDQLTVITGVSGSGKSSLAFDVIYGEGQRRFLDSISTF 63 + I I GA+ +NLKNI VEIPRD+L V+TG+SGSGKSSLAFD IY EGQRR+++S+S + Sbjct: 3 KEKIVIQGARAHNLKNIDVEIPRDKLVVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAY 62 Query: 64 AKSRISQLKKAKVDYVRGLSPVIAIEQKKSNNNPRSTVGTVTDINDYLRLLYATAGVGRC 123 A+ + Q+ K VD + GLSP I+I+QK ++ NPRSTVGTVT+I+DYLRLLYA G C Sbjct: 63 ARQFLGQMDKPDVDLIEGLSPAISIDQKTTSRNPRSTVGTVTEIHDYLRLLYARVGHPVC 122 Query: 124 PECGHSLKQLSAAQIAERISSLPSGTVVELRAPVYKVFGEEYSFTFQQLRDKGYKNLLVD 183 P G + + Q+ +R+ P T +++ AP+ + T ++++ +GY + VD Sbjct: 123 PNHGIEITSQTIEQMVDRVLEYPEKTRIQIMAPIVSGKKGTHKKTIEEIKKEGYVRIRVD 182 Query: 184 GEPFSLAEKRELDETREYHIEMVIDRFQLKKDTYIQLTKSIEAAMLALEEDIMIKVEVPG 243 GE + + ++ E+++ +++ IE++IDR +K+ +L SIEAA L L + + VE+ G Sbjct: 183 GEIYDINDEIEIEKNKKHSIEIIIDRIVIKEGINTRLYDSIEAA-LRLADGYAV-VEIMG 240 Query: 244 GVDPSFYQEFGCPEHHFFLCDMQPFHFSFNSPVSACHTCLGVGMSYVVEPRFLVVAPEKS 303 + F + + CP F + +++P FSFNSP AC TC G+G V+ V P++S Sbjct: 241 DKELLFSEHYACPYCGFSVGELEPRMFSFNSPFGACPTCDGLGTKLEVD--VDTVIPDRS 298 Query: 304 ISKGALKNTVFNPAGKDSYRSVLMYSLSQKYHFSLDTPFCDLPKEIHDILFYGTKGEVLP 363 ++ + P Y +L S +++ +DTP +L KE DI+ G+K + Sbjct: 299 LTLNEGAIVPWRPISSQYYPQMLA-SACKEFGIDMDTPIEELSKEALDIVLNGSKDKEF- 356 Query: 364 MLQPPNS---TKKNWMIGRDRPFWGFVHEMESWYKHYIRKNSTSEAFEPAFIKDCMIEKI 420 + N T++ W+ PF G + +E Y+ T+ F + M + Sbjct: 357 YFEYKNDFGMTRETWI-----PFEGILPNIERRYRE------TNSDFTRDQMAQYMTDLP 405 Query: 421 CPECSGARLKKQRLQVTLGEENIDQLSRKQLPELLHSLETLTFEAEVQDVASSIIQEIRT 480 CP C G RLK++ L V + +I Q+S + E L ++L + +A+ I +E+R Sbjct: 406 CPSCKGYRLKEETLSVKVNNHHIGQISEFSINEALDFFDSLELSEKETQIAAPIFKEVRA 465 Query: 481 RVSLLIDIGLHYISLNRRSDSISGGEMQRIKMSTQISSELMGMLYVMDEPSIGLHPRDSS 540 R+ L ++GL Y++++R + ++SGGE QRI+++TQI S L G+LY++DEPSIGLH RD+ Sbjct: 466 RLGFLKNVGLDYLTMSRAAGTLSGGEAQRIRLATQIGSRLTGVLYILDEPSIGLHQRDND 525 Query: 541 RVIDTMKKLRDIGNTVIVVEHDMDTIQSADXXXXXXXXXXXXXXXVVACGTMEDIMNEPQ 600 R+I+T++ +RDIGNT+IVVEHD DT+ +AD +VA GT E++ Sbjct: 526 RLINTLQSMRDIGNTLIVVEHDEDTMMAADYLIDIGPGAGEHGGRIVAAGTPEEVAKNKN 585 Query: 601 SVTGQYLSGKAHIPVPGKRRSLGDDFLSIQGARENNLKNVDLDIPLGVFICITGVSGSGK 660 S+TG YLSGK IPVP KRR L I GA+ NNLKNV+ IPL F C+TGVSGSGK Sbjct: 586 SITGDYLSGKKFIPVPAKRRKGNGLELEIVGAKANNLKNVNAKIPLATFSCVTGVSGSGK 645 Query: 661 SSLINEILFKQLKIDMTAARMVAGEHDFLFGADLLNNVINIDQTPIGRNSKSNPATYIGI 720 SSL+NE+L K L + GEH + G + L +INIDQ+PIGR +SNPATY G Sbjct: 646 SSLVNEVLRKALARKLNRNHAKPGEHKEIKGIENLEKIINIDQSPIGRTPRSNPATYTGA 705 Query: 721 YDKIRDLFASQPEAADRGYQAIDFSLTHAGGTRCEQCAGDGVIVTNLQFMADIETICPVC 780 +D IRDLFAS EA RGY+ FS GG RCE C GDG+I + F+ D+ C VC Sbjct: 706 FDDIRDLFASTNEAKVRGYKKGRFSFNVKGG-RCEACKGDGIIKIEMHFLPDVYVPCEVC 764 Query: 781 KGQRFSEEGLEIKVHGKSIADVLEMTVEEAREFFSDHKYLKHKLEIMDELGLGYMRLGQS 840 G+R++ E L+I+ GK+IA+VLEMTVEE E+F++ + KL+ + ++GLGY+RLGQ Sbjct: 765 HGKRYNGETLDIRYKGKNIAEVLEMTVEEGLEYFTNQPRIARKLQTIVDVGLGYIRLGQP 824 Query: 841 STTLSGGEAQRVKLAYELSKIKRGARNLYILDEPTTGLHLSDIQKLLLSLGRLVDK-GHT 899 +TTLSGGEAQRVKLA EL K G ++ YILDEPTTGLH DI +LL L RLV++ G T Sbjct: 825 ATTLSGGEAQRVKLASELHKRSNG-KSFYILDEPTTGLHADDIGRLLKVLQRLVEENGDT 883 Query: 900 VIVVEHHLDVMKSADYIIDMGPEGGHQGGYVVAEGTPEQVAQVEASHTGRFLRTVL 955 V+V+EH+LDV+K ADY+ID+GPEGG GG ++A GTPE++A+ + S+TG++L+ +L Sbjct: 884 VLVIEHNLDVIKQADYLIDLGPEGGDGGGQIIATGTPEKIARSKKSYTGKYLKPIL 939 >RSc0420 [L] COG0178 Excinuclease ATPase subunit Length = 954 Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/966 (42%), Positives = 617/966 (63%), Gaps = 33/966 (3%) Query: 6 TIEISGAKQNNLKNISVEIPRDQLTVITGVSGSGKSSLAFDVIYGEGQRRFLDSISTFAK 65 I+I GA+ +NLKNI++++PR+QL VITG+SGSGKSSLAFD +Y EGQRR+++S+S +A+ Sbjct: 3 AIKIRGARTHNLKNINLDLPRNQLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR 62 Query: 66 SRISQLKKAKVDYVRGLSPVIAIEQKKSNNNPRSTVGTVTDINDYLRLLYATAGVGRCPE 125 + ++K VD + GLSP I+IEQK +++NPRSTVGTVT+I+DYLRLLYA AG CPE Sbjct: 63 QFLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARAGTPYCPE 122 Query: 126 CGHSLKQLSAAQIAERISSLPSGTVVELRAPVYKVFGEEYSFTFQQLRDKGYKNLLV--- 182 G L+ S +Q+ + + +LP+ T + + APV E+ F+ ++ +G+ + Sbjct: 123 HGQPLEAQSVSQMVDAVLALPADTKLMILAPVVTNRKGEHVDLFEAMQAQGFVRFRIRSG 182 Query: 183 -------DGEPFSLAEKRELDETREYHIEMVIDRFQLKKDTYIQLTKSIEAAMLALEEDI 235 + + + + +L + ++ IE+V+DR ++ + +L +S E A L L + Sbjct: 183 GGTAHEAEAKVYEVDALPKLKKNDKHAIEVVVDRVKVNPELKQRLAESFETA-LRLADGR 241 Query: 236 MIKVEVPGGVDPSFYQEFGCPEHHFFLCDMQPFHFSFNSPVSACHTCLGVGMSYVVEPRF 295 + +E+ G + F +F CP + L +++P FSFN+P+ AC C G+G +P+ Sbjct: 242 ALALEMDTGKEHVFSSKFACPICSYSLPELEPRLFSFNNPMGACPHCDGLGQITFFDPKR 301 Query: 296 LVVAPEKSISKGALKNTVFNPAGKDSYRSVLMYSLSQKYHFSLDTPFCDLPKEIHDILFY 355 +V P S++ GA+K ++ + ++ SL+ Y F DTPF +LP E+ D++ Sbjct: 302 VVAFPNLSLASGAIKGW----DRRNQFYFQMLQSLAAFYDFDTDTPFEELPSEVQDVVLQ 357 Query: 356 GTKGEVLPMLQPPNSTKKNWMIGRDRPFWGFVHEMESWYKHYIRKNSTSEAFEPAFIKDC 415 G+ + +P ++ R+ F G + +E YK +S + E A ++ Sbjct: 358 GSGKQQIPFTY---INERGRTTVREHAFEGIIPNLERRYKE---TDSIAVREELAKYQN- 410 Query: 416 MIEKICPECSGARLKKQRLQVTLGEEN----IDQLSRKQLPELLHSLETLTFEAEVQDVA 471 + CPEC G RL+++ V LG+ + I +++ L + L TL +++A Sbjct: 411 --NQACPECEGTRLRREARHVKLGDSDQARAIYEINGWPLRDALTYFLTLNLHGAKREIA 468 Query: 472 SSIIQEIRTRVSLLIDIGLHYISLNRRSDSISGGEMQRIKMSTQISSELMGMLYVMDEPS 531 I+QEI +R++ L ++GL Y+SL R +D++SGGE QRI++++QI S L G++YV+DEPS Sbjct: 469 DKIVQEITSRLNFLNNVGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPS 528 Query: 532 IGLHPRDSSRVIDTMKKLRDIGNTVIVVEHDMDTIQSADXXXXXXXXXXXXXXXVVACGT 591 IGLH RD+ R+I T+K LRD+GN+V+VVEHD D I+++D ++A GT Sbjct: 529 IGLHQRDNDRLIGTLKHLRDLGNSVLVVEHDEDMIRASDHVVDIGPGAGVHGGQIIAEGT 588 Query: 592 MEDIMNEPQSVTGQYLSGKAHIPVPGKRRSLGDD--FLSIQGARENNLKNVDLDIPLGVF 649 I P S+TG+YLSGK I VP K+R+ D+ +L I A NNLK+V+ DIP+G+ Sbjct: 589 PRQIERSPGSLTGEYLSGKRRIEVP-KQRTAPDEARWLRIVNASGNNLKHVNADIPVGLL 647 Query: 650 ICITGVSGSGKSSLINEILFKQLKIDMTAARMVAGEHDFLFGADLLNNVINIDQTPIGRN 709 C+TGVSGSGKS+LIN+ L+ + + + HD + G + + VIN+DQ+PIGR Sbjct: 648 TCVTGVSGSGKSTLINDTLYNAVARHLYGSTPEPTAHDRIDGLEHFDKVINVDQSPIGRT 707 Query: 710 SKSNPATYIGIYDKIRDLFASQPEAADRGYQAIDFSLTHAGGTRCEQCAGDGVIVTNLQF 769 +SNPATY G++ IR+L+A P A +RGY FS GG RCE C GDGV+ + F Sbjct: 708 PRSNPATYTGLFTPIRELYAGVPAAKERGYDPGRFSFNVKGG-RCEACQGDGVLKVEMHF 766 Query: 770 MADIETICPVCKGQRFSEEGLEIKVHGKSIADVLEMTVEEAREFFSDHKYLKHKLEIMDE 829 + D+ C VC G+R++ E LE+ GK+I +VLEMTVE+A EFF+ ++ KL+ + + Sbjct: 767 LPDVYVPCDVCHGKRYNRETLEVLYKGKNITEVLEMTVEQAHEFFAPVPVVRRKLQTLLD 826 Query: 830 LGLGYMRLGQSSTTLSGGEAQRVKLAYELSKIKRGARNLYILDEPTTGLHLSDIQKLLLS 889 +GLGY+RLGQS+TTLSGGEAQRVKL+ ELSK G R LYILDEPTTGLH DI+ LL Sbjct: 827 VGLGYIRLGQSATTLSGGEAQRVKLSLELSKRDTG-RTLYILDEPTTGLHFHDIELLLKV 885 Query: 890 LGRLVDKGHTVIVVEHHLDVMKSADYIIDMGPEGGHQGGYVVAEGTPEQVAQVEASHTGR 949 + +L D+G+TV+++EH+LDV+K+AD+++D+GPEGG GG ++A+GTPE+VA+ AS TG+ Sbjct: 886 IHKLRDQGNTVVIIEHNLDVIKTADWLLDLGPEGGAGGGQIIAKGTPEEVAKSRASFTGK 945 Query: 950 FLRTVL 955 +L +L Sbjct: 946 YLAPLL 951 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 67,919,093 Number of extensions: 2886798 Number of successful extensions: 24419 Number of sequences better than 1.0e-05: 44 Number of HSP's gapped: 25154 Number of HSP's successfully gapped: 72 Length of query: 955 Length of database: 38,378,431 Length adjustment: 116 Effective length of query: 839 Effective length of database: 24,999,687 Effective search space: 20974737393 Effective search space used: 20974737393 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 121 (51.2 bits)