BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0106.0001.p
         (296 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH3506_2 [S] COG3708 Uncharacterized protein conserved in bacteria     55   1e-07
CAC0426_1 [K] COG2207 AraC-type DNA-binding domain-containing pr...    55   1e-07
PAE2839 [C] COG0243 Anaerobic dehydrogenases, typically selenocy...    55   2e-07
mll1128 [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, ...    55   2e-07
aq_217 [C] COG0243 Anaerobic dehydrogenases, typically selenocys...    55   2e-07

>BH3506_2 [S] COG3708 Uncharacterized protein conserved in bacteria
          Length = 167

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 68/166 (40%), Gaps = 21/166 (12%)

Query: 140 PPFSIAGLEYQVDVNDNMANQT---------ANRLGVAFFYKDRPRIINPVNKDIYIGYT 190
           P F I G E +    D   N+           N+LG          I NP++K + +G  
Sbjct: 8   PAFHIIGYELKTKNADGQNNKDIPEFWQHYLKNKLGCT--------IPNPLHKHVELGIC 59

Query: 191 TVPEPFQGYTWYQPSVEINQSSIVPPDMSVKHVAPHRYGVFTYMGPHRPEEINSKSLSTI 250
           T   P  G   Y   +E+ + +  P  M  K      Y VFT   P   EE  + S+ + 
Sbjct: 60  TEFNPETGEFVYVIGMEVEKGTKAPEGMVYKSFPELEYAVFT--TPKANEESFTSSIQST 117

Query: 251 WRYIFETWMPTVQFDLKEKFSFELINYARCN-KQYCECNLYYPISQ 295
           W YIF  W P   ++      FEL +  RC+  +  E ++Y P+ +
Sbjct: 118 WNYIFTEWFPQSDYEHNGVVEFELYD-ERCHGTENIEMDIYIPVKK 162


>CAC0426_1 [K] COG2207 AraC-type DNA-binding domain-containing proteins
          Length = 127

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 47/81 (58%)

Query: 35  ISKFHLLRIWKGATAIGLMEYVRRRRIALSLGDLIHERNSIEFISSKYSFGCERTYSRVF 94
           +SKF+ LRI+K  T + L +Y+R R+++L+  D++     I  IS KY +     +++ F
Sbjct: 33  MSKFYFLRIFKILTGMTLGDYIRERKLSLATKDIVSTNQKIIDISYKYGYETPEAFTKAF 92

Query: 95  KEEFNISPAKWRRSPTPLQIM 115
           K    ISP + R+S   L+ +
Sbjct: 93  KRLNGISPTEARKSKNNLKAI 113


>PAE2839 [C] COG0243 Anaerobic dehydrogenases, typically
           selenocysteine-containing
          Length = 289

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 32  QVNISKFHLLRIWKGATAIGLMEYVRRRRIALSLGDLIHERNSIEFISSKYSFGCERTYS 91
           +   SK+HL R++K  T   +  Y+R RR++ S   L      I  I+ +Y F  ++T++
Sbjct: 30  KAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFT 89

Query: 92  RVFKEEFNISPAKWRRSP 109
           R FK++F  +PA +RRSP
Sbjct: 90  RAFKKQFAQTPALYRRSP 107


>mll1128 [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, large
           subunit CoxL/CutL homologs
          Length = 289

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 32  QVNISKFHLLRIWKGATAIGLMEYVRRRRIALSLGDLIHERNSIEFISSKYSFGCERTYS 91
           +   SK+HL R++K  T   +  Y+R RR++ S   L      I  I+ +Y F  ++T++
Sbjct: 30  KAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFT 89

Query: 92  RVFKEEFNISPAKWRRSP 109
           R FK++F  +PA +RRSP
Sbjct: 90  RAFKKQFAQTPALYRRSP 107


>aq_217 [C] COG0243 Anaerobic dehydrogenases, typically
           selenocysteine-containing
          Length = 289

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 32  QVNISKFHLLRIWKGATAIGLMEYVRRRRIALSLGDLIHERNSIEFISSKYSFGCERTYS 91
           +   SK+HL R++K  T   +  Y+R RR++ S   L      I  I+ +Y F  ++T++
Sbjct: 30  KAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFT 89

Query: 92  RVFKEEFNISPAKWRRSP 109
           R FK++F  +PA +RRSP
Sbjct: 90  RAFKKQFAQTPALYRRSP 107


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.323    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 20,869,503
Number of extensions: 828948
Number of successful extensions: 1792
Number of sequences better than 1.0e-05: 730
Number of HSP's gapped: 1795
Number of HSP's successfully gapped: 730
Length of query: 296
Length of database: 38,378,431
Length adjustment: 106
Effective length of query: 190
Effective length of database: 26,153,027
Effective search space: 4969075130
Effective search space used: 4969075130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 115 (48.9 bits)