BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0105.0010.p (194 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0719 [K] COG1309 Transcriptional regulator 74 1e-13 SA2165 [K] COG1309 Transcriptional regulator 70 1e-12 SA2379 [K] COG1309 Transcriptional regulator 61 9e-10 L103086 [K] COG1309 Transcriptional regulator 57 1e-08 L108801 [K] COG1309 Transcriptional regulator 55 7e-08 >BH0719 [K] COG1309 Transcriptional regulator Length = 188 Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 88/175 (50%), Gaps = 11/175 (6%) Query: 18 LLKDAVVELMEEMNVQKISVNRIAERAKINRVTFYLHYKDIPDMLEKMADEMVEDITRVV 77 LLK+++++LM+E + I++ I + A INR TFY HY D+ D+L ++ DE+++D++ + Sbjct: 15 LLKESLMKLMQEKPLSNITIKEICDLADINRSTFYSHYTDLYDLLYQIEDEIIKDLSEAL 74 Query: 78 NSNAAGNSEPGEHEDWPVLENLLKYIAENARFYKTVLTSRRSSIFSDRLFNLIADMIAAR 137 +S E E + ENLL YIA N +T+ + F ++ L D + Sbjct: 75 SSYNYTKDE----EALQMTENLLVYIANNRESCQTLFSEYGDPSFQKKVMMLAHDHVIKT 130 Query: 138 VERGV-SAADTSQVSIQKDIATWYGSAALIGTIIAWLRNDMPYTPSYLAKQITSL 191 G + D S+ + Y I + +WL+N + +P +A+ I L Sbjct: 131 PLVGKHTKPDISEY------VSLYIVNGSIHIVQSWLKNGLKQSPKEMAELIIKL 179 >SA2165 [K] COG1309 Transcriptional regulator Length = 207 Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 14/179 (7%) Query: 19 LKDAVVELMEEMNVQKISVNRIAERAKINRVTFYLHYKDIPDMLEKMADEMVEDITRVVN 78 +K A +L++E +++KI++ I RA INR TFYLHY+D +L M DE + ++T Sbjct: 14 IKQAFTKLLQEKDLEKITIRDITTRADINRGTFYLHYEDKYMLLADMEDEYISELTTYTQ 73 Query: 79 SNAAGNSEPGEHEDWP------VLENLLKYIAENARFYKTVLTSRRSSIFSDRLFNLIAD 132 + S ED +L+N+ ++I +N FY T+L R+S + I + Sbjct: 74 FDLLRGSSI---EDIANTFVNNILKNIFQHIHDNLEFYHTILQLERTSQLELK----INE 126 Query: 133 MIAARVERGVSAADTSQVSIQKDIATWYGSAALIGTIIAWLRNDMPYTPSYLAKQITSL 191 I ++R +S + S + + Y S A I I W+ + P + LAK + ++ Sbjct: 127 HIKNNMQRYIS-INHSIGGVPEMYFYSYVSGATISIIKYWVMDKQPISVDELAKHVHNI 184 >SA2379 [K] COG1309 Transcriptional regulator Length = 195 Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 68/116 (58%), Gaps = 7/116 (6%) Query: 19 LKDAVVELMEEMNVQKISVNRIAERAKINRVTFYLHYKDIPDMLEKMADEMVEDITRVVN 78 +++A +EL+ + +++I+V +IA+ A +NR TFY HY D D+LEK+ D+ +E+I ++ Sbjct: 14 MRNAFIELLHQHQLEEITVQQIADLADVNRSTFYTHYYDKYDLLEKLEDQQLEEIRDFIH 73 Query: 79 ----SNAAGNSEPGEHEDWPVLENLLKYIAENARFYKTVLTSRRSSIFSDRLFNLI 130 + A S H+ ++ L+ I ++ FY+ + + S ++L++LI Sbjct: 74 DEKLNGAVKLSTDNIHQ---IMTVLIDMIEKDIAFYQLMFRMGKDSNIHEKLYDLI 126 >L103086 [K] COG1309 Transcriptional regulator Length = 177 Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/176 (23%), Positives = 78/176 (44%), Gaps = 17/176 (9%) Query: 19 LKDAVVELMEEMNVQKISVNRIAERAKINRVTFYLHYKDIPDMLEKMADEMVEDITRVVN 78 L+DA+++L+ E + +IS + + AK++R +FY HY+D DM+E + E I V Sbjct: 14 LRDAMIQLLGEKSFDQISTTELVKLAKVSRSSFYTHYQDKYDMIEAYQRRLFETIQYVFE 73 Query: 79 SNAAGNSEPGEHEDWPVLENLLKYIAENARFYKTVLTSRRSSIFSDRLFNLIADMIAARV 138 N GN E + L + + Y +L+ S + + ++I + Sbjct: 74 KN-NGNIHATMLETFEFL--------KGNQIYAALLSENGSKEIHQFMLQKLKELIQSSF 124 Query: 139 ---ERGVSAADTSQVSIQKDIATWYGSAALIGTIIAWLRNDMPYTPSYLAKQITSL 191 + + ++ AT Y + A+ GT +W+R TP+ +A + L Sbjct: 125 FPQSKHLKLGKLGEI-----YATTYYANAIFGTTQSWIRRKQKETPTQIANLLVEL 175 >L108801 [K] COG1309 Transcriptional regulator Length = 204 Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 5/179 (2%) Query: 17 ELLKDAVVELMEEMNVQKISVNRIAERAKINRVTFYLHYKDIPDMLEKMADEMVEDITRV 76 +L+ A L+ + +KIS+ IA+ A INR TFY HY D D+ + + D+ + T + Sbjct: 14 KLISQAFFGLLRKKKFEKISIQEIADSAMINRATFYAHYADKQDLYDSLIDQFLASFTGI 73 Query: 77 VN-SNAAGNSEPGEHEDWPVLENLLKYIAENARFYKTVLTSRRSSIFSDRLFNLIADMIA 135 ++ N + E VL +++ +N + + +R ++++ Sbjct: 74 LDEQNLVDGNNVHVKEIETVLSRFYEFVRDNPEIAQMITDRAHDQRLKNRFLEILSERYT 133 Query: 136 ARVER-GVSAADTSQVSIQKDIATWYGSAALIGTIIAWLRNDMPYTPSYLAKQITSLRS 193 E+ V D V + D Y S+ L+GT+ W+ + A I L S Sbjct: 134 ELFEKLEVREKD---VVVPNDFVISYISSILVGTLDWWVSTSTQMSARDFAHLIIKLIS 189 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.130 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 11,420,908 Number of extensions: 366009 Number of successful extensions: 1165 Number of sequences better than 1.0e-05: 8 Number of HSP's gapped: 1162 Number of HSP's successfully gapped: 8 Length of query: 194 Length of database: 38,378,431 Length adjustment: 101 Effective length of query: 93 Effective length of database: 26,729,697 Effective search space: 2485861821 Effective search space used: 2485861821 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 113 (48.1 bits)