BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0105.0008.p (259 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Cgl1198 [P] COG1119 ABC-type molybdenum transport system, ATPase... 200 1e-51 Cgl2393 [P] COG1119 ABC-type molybdenum transport system, ATPase... 149 4e-36 BMEII0537 [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores tran... 110 2e-24 MJ0873 [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transpo... 107 1e-23 alr4033 [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transp... 107 3e-23 >Cgl1198 [P] COG1119 ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA Length = 673 Score = 200 bits (509), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 17/256 (6%), Positives = 44/256 (17%), Gaps = 1/256 (0%) Query: 1 MIIDLHDVTWTQGIHTLLNGVNWTVRPGEHWALLGLNGSGKTTLLNMITGYLWPTTGSIS 60 + I L + + Sbjct: 27 GKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARGLMISTFHT 86 Query: 61 VLGERYGEVDLREMRKSIGWGSSSLQEKLYGTDRTQNVVISGKHATIGLY-DHLTEQDTV 119 + + K+ + + T+ ++ K L ++ + Sbjct: 87 LGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDL 146 Query: 120 RAGELMKQLGCFHLWDREYRTCSQGEKQKLLIARALMADPRVLILDEPCNGLDLFSRERL 179 + + D +L ++ R + Sbjct: 147 KTPSQAAASAIGERDRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQANEEVRKRWQN 206 Query: 180 LDSIRELALSKEMPTLIYVTHHTEEILPVFSHTLLLRRGQVVQSGLTSEVLTAGVLSDFF 239 + ++ T Y + + + DF Sbjct: 207 KIRYLLVDEYQDTNTSQYELVKLLVGSRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFP 266 Query: 240 ESEVIVERHGERVYVR 255 +VI R R Sbjct: 267 ALKVIKLEQNYRSSGR 282 >Cgl2393 [P] COG1119 ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA Length = 673 Score = 149 bits (377), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 17/248 (6%), Positives = 45/248 (18%), Gaps = 5/248 (2%) Query: 1 MIIDLHDVTWTQGIHTLLNGVNWTVRPGEHWALLGLNGSGKTTLLNMITGYLWPTTGSIS 60 V + G +L G + L ++ Sbjct: 4 NPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREM 63 Query: 61 VLGERYGEVDLREMRKSIGWGSSSLQEKLYGTDRTQNVVISGKHATIGLYDH--LTEQDT 118 I L R + + ++ ++ Sbjct: 64 KERVGQTLGRKEARGLMISTFH---TLGLDIIKREYAALGMKANFSLFDDTDQLALLKEL 120 Query: 119 VRAGELMKQLGCFHLWDREYRTCSQGEKQKLLIARALMADPRVLILDEPCNGLDLFSRER 178 ++ L + + A A+ R+ L + Sbjct: 121 TEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGERDRIFAHCYGLYDAHLKACNV 180 Query: 179 LLDSIRELALSKEMPTLIYVTHHTEEILPVFSHTLLLRRGQVVQSGLTSEVLTAGVLSDF 238 L L + + V + + + V + + Sbjct: 181 LDFDDLILLPTLLLQANEEVRKRWQNKIRYLLVDEYQDTNTSQYELVKLLVGSRARFTVV 240 Query: 239 FESEVIVE 246 + + + Sbjct: 241 GDDDQSIY 248 >BMEII0537 [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Length = 264 Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 76/253 (30%), Positives = 129/253 (50%), Gaps = 11/253 (4%) Query: 1 MIIDLHDVTWTQGIHTLLNGVNWTVRPGEHWALLGLNGSGKTTLLNMITGYLWPTTGSIS 60 M++ +V W G +L+ V+ V GE ++G NGSGKTTLL++++G P +G++ Sbjct: 1 MMLSARNVCWAAGCAEILHDVSLDVVKGEFLGIIGPNGSGKTTLLSLLSGIRRPRSGTVL 60 Query: 61 VLGERYGEVDLREMRKSIGWGSSSLQEKLYGTDR--TQNVVISGKHATIGLYDHLTEQDT 118 + + + RE+ + + ++++ T+R + V G+ +G + D Sbjct: 61 LGNAPIQKFNRREIARRLAL----VEQQAETTERITARQAVELGRTPYLGALSPWSAADD 116 Query: 119 VRAGELMKQLGCFHLWDREYRTCSQGEKQKLLIARALMADPRVLILDEPCNGLDLFSRER 178 G+ ++ + HL R + T S GE+Q+L IARAL +P++L+LDEP N LD+ + Sbjct: 117 AIVGKALENVDMAHLAGRCWHTLSGGERQRLHIARALAQEPQILLLDEPTNHLDIGHQIG 176 Query: 179 LLDSIRELALSKEMPTLIYVTHHTEEILPVFSHTLLLRRGQVVQSGLTSEVLTAGVLSDF 238 LLD + S++ T++ H ++ GQ+V G EVL+A + Sbjct: 177 LLDLV-----SRQGLTVVAALHDLNHAAMFCDRIAVMDTGQLVALGSPREVLSAESIRAV 231 Query: 239 FESEVIVERHGER 251 F EV VE HG R Sbjct: 232 FGVEVDVEYHGVR 244 >MJ0873 [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Length = 290 Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 127/239 (53%), Gaps = 11/239 (4%) Query: 13 GIHTLLNGVNWTVRPGEHWALLGLNGSGKTTLLNMITGYLWPTTGSISVLGERYGEVDLR 72 G + ++ G+N + GE ++G NG+GK+TLL I YL P G + + G++ ++ + Sbjct: 12 GNYVVVEGINLEINRGEILCIIGPNGAGKSTLLKTIATYLKPKKGVVYLNGKKIHDLKPK 71 Query: 73 EMRKSIGWGSSSLQEKLYGTDRTQ-NVVISGKHATIGLYDHLTEQDTVRAGELMKQLGCF 131 ++ K + + L E++ + T +VV G+H L+ LTE+D E + + Sbjct: 72 DLAKEM---AVVLTERVNPGNMTGFDVVAIGRHPYTDLFGRLTERDKKIIIESARAVNAE 128 Query: 132 HLWDREYRTCSQGEKQKLLIARALMADPRVLILDEPCNGLDLFSRERLLDSIRELALSKE 191 +L ++ + S GE+QK++IARAL +P+VLILDEP + LD + L +R+LA K Sbjct: 129 YLLEKNFFEMSDGERQKIMIARALAQEPKVLILDEPTSFLDAKHKIELTLLLRKLADEKN 188 Query: 192 MPTLIYVTHHTEEILPVFSHTLLLRRGQVVQSGLTSEVLTAGVLSDFFE------SEVI 244 + ++ H E L + L++ +V+ G V+ ++++ ++ SEVI Sbjct: 189 L-AIVVTLHDIELALRIADKMALIKNHKVIAYGYPENVMKREIVNELYDLKNANYSEVI 246 >alr4033 [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Length = 359 Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 13/235 (5%), Positives = 30/235 (12%), Gaps = 5/235 (2%) Query: 9 TWTQGIHTLLNGVNWTVRPGEHWALLGLNGSGKTTLLNMITGYLWPTTGSISVLGERYGE 68 + G L + L Sbjct: 13 LRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADAFGVARLEEALRLRAGGIT 72 Query: 69 VDLREMRKSIGWGSSSLQEKL-YGTDRTQNVVISGKHATIGLYDHLTEQDTVRAGELMKQ 127 + + + + T A ++ M + Sbjct: 73 KPVLLLEGFF---DARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWMKLDTGMHR 129 Query: 128 LGCFHLWDREYRTCSQGEKQKLLIARALMADPRVLILDEPCNGLDLFSRERLLDSIRELA 187 LG + K + R L + Sbjct: 130 LGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFCEGKPGQR 189 Query: 188 LSKEMPTLIYVTHHTEEILPVFSHTLLLRRGQVVQSGLTSEVLTAGVLSDFFESE 242 ++ + L +S + Sbjct: 190 SIAASGGILL-WPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSLIA 243 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.137 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,125,837 Number of extensions: 858051 Number of successful extensions: 17117 Number of sequences better than 1.0e-05: 1885 Number of HSP's gapped: 14956 Number of HSP's successfully gapped: 2047 Length of query: 259 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 155 Effective length of database: 26,383,695 Effective search space: 4089472725 Effective search space used: 4089472725 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 115 (48.9 bits)