BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0105.0004.p (279 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Cgl2406 [G] COG0395 ABC-type sugar transport system, permease co... 177 1e-44 MYPU_1000 [G] COG0395 ABC-type sugar transport system, permease ... 165 8e-41 SP1895 [G] COG0395 ABC-type sugar transport system, permease com... 156 4e-38 BS_amyC [G] COG0395 ABC-type sugar transport system, permease co... 148 1e-35 BH1119 [G] COG0395 ABC-type sugar transport system, permease com... 141 1e-33 >Cgl2406 [G] COG0395 ABC-type sugar transport system, permease component Length = 304 Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 97/256 (37%), Positives = 146/256 (57%), Gaps = 6/256 (2%) Query: 29 PFYFLLANSVKSYSEILSDSSALPTVFQW---NNYAEAWKATDFPHAFXXXXXXXXXXXX 85 P F+ NS KS I SD +LP W N+ F A Sbjct: 50 PILFIFINSFKSKFAISSDPFSLPIGETWVGFENFMVGLTKQGFLEATLWSFIITILSVI 109 Query: 86 XXAFLCSMCAYKMVRNNSRYNRILYVALVAAMVIPFQAIMIPLVQIVSRLGVMDSTAGLI 145 F +M AY + R + + +LY V +M+IPFQ +M P V+I L +++ G++ Sbjct: 110 VIVFFSAMTAYYITRVKTWWTNLLYYLFVVSMIIPFQMVMFPTVKIADMLH-LNNPIGIV 168 Query: 146 LAYLGFGAPMTVFLLHGFVKSVPIDIEEASRVDGSSPYGTFFRVVLPLMQPIIVTVIILN 205 + YLGFG+ ++VF+ GFVKS+P+D+EEA+ +DG P +FRVV P+++P +TV ILN Sbjct: 169 VLYLGFGSGLSVFMFAGFVKSIPLDVEEAAMIDGCGPLQNYFRVVWPMLKPTAITVAILN 228 Query: 206 TLWIWNDYLMPSLILQ-SPALRTIPIATYTFFGQYTKQWDLALPG-LVLGITPVVLFFLL 263 +W+WNDYL+P L++ S +TIP+ +F G + A+ LVL I P+V+F+ Sbjct: 229 AMWVWNDYLLPYLVIGLSTRYKTIPVVIQSFVGSNGNRDTGAMMAMLVLAIIPIVIFYFS 288 Query: 264 MQKYIIEGIAQGSVKG 279 Q++IIEG+A G+VKG Sbjct: 289 TQRHIIEGVAAGAVKG 304 >MYPU_1000 [G] COG0395 ABC-type sugar transport system, permease component Length = 288 Score = 165 bits (417), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 89/254 (35%), Positives = 157/254 (61%), Gaps = 8/254 (3%) Query: 31 YFLLAN-SVKSYSEILSDSS-ALPTVFQWNNYAEAWKATDFPHAFXXXXXXXXXXXXXXA 88 YFL+ N S K+ +E+++ + ALP+ ++ NY A++A +F +F Sbjct: 37 YFLMTNTSFKNITELITKNIFALPSKYEGPNYQRAFQALNFAESFSVSLLVTIVSNISII 96 Query: 89 FLCSMCAYKMVRNNSRYNRILYVALVAAMVIPFQAIMIPLVQIVSRLGVMDSTAGLILAY 148 F S+ A+++ R+ ++I++ + +++PFQAIM+PL+ ++ ++ ++ GLI Y Sbjct: 97 FFSSITAWQLARSKRLISKIIFYMFLITIIVPFQAIMLPLIYLMGKMKFLN-LFGLIFMY 155 Query: 149 LGFGAPMTVFLLHGFVKSVPIDIEEASRVDGSSPYGTFFRVVLPLMQPIIVTVIILNTLW 208 GFG P+++F++HGF+ ++P+ +EE S+V+G P +F+++LPL++PII TV I+NT+W Sbjct: 156 TGFGMPISIFMMHGFLSNIPLSLEEVSKVEGYRPIRVYFKIILPLLKPIIATVAIINTIW 215 Query: 209 IWNDYLMPSLIL----QSPALRTIPIATYTFFGQYTKQWDLALPGLVLGITPVVLFFLLM 264 IWND+L+P L+ SP I + G Y + + GL + I P+V+FF++M Sbjct: 216 IWNDFLLPYLVYLSNSHSPTTTIIRLQE-GLVGTYGTDFTAIMAGLTILIIPIVIFFIVM 274 Query: 265 QKYIIEGIAQGSVK 278 QK II GI G++K Sbjct: 275 QKNIISGITNGAIK 288 >SP1895 [G] COG0395 ABC-type sugar transport system, permease component Length = 278 Score = 156 bits (394), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 84/255 (32%), Positives = 144/255 (56%), Gaps = 6/255 (2%) Query: 28 VPFYFLLANSVKSYSEILSDSSALPTVFQWNNYAEAWKATDFPHAFXXXXXXXXXXXXXX 87 VP L +S K +I+ + PT F W+N++ A + Sbjct: 26 VPLLATLFSSFKPTKDIVDNFFGFPTNFTWDNFSRLL-ADGIGGYYWNSVVITVLSLLAV 84 Query: 88 AFLCSMCAYKMVRNNSRYN--RILYVALVAAMVIPFQAIMIPLVQIVSRLGVMDSTAGLI 145 M AY + RN S+ I+Y L+ + +PFQ IMIP+ ++S+LG + +T GLI Sbjct: 85 MIFIPMAAYSIARNMSKRKAFTIMYTLLILGIFVPFQVIMIPITVMMSKLG-LANTFGLI 143 Query: 146 LAYLGFGAPMTVFLLHGFVK-SVPIDIEEASRVDGSSPYGTFFRVVLPLMQPIIVTVIIL 204 L YL + P T+FL G++K S+P ++EA+ +DG++ + T+FR++ P+M+P+ T +I+ Sbjct: 144 LLYLTYAIPQTLFLYVGYIKISIPESLDEAAEIDGANQFTTYFRIIFPMMKPMHATTMII 203 Query: 205 NTLWIWNDYLMPSLIL-QSPALRTIPIATYTFFGQYTKQWDLALPGLVLGITPVVLFFLL 263 N LW WND+++P L+L + + T+P+ Y + GQY + + V+GI + + +L Sbjct: 204 NALWFWNDFMLPLLVLNRDSKMWTLPLFQYNYAGQYFNDYGPSFASYVVGIISITIVYLF 263 Query: 264 MQKYIIEGIAQGSVK 278 Q++II G++ G+VK Sbjct: 264 FQRHIISGMSNGAVK 278 >BS_amyC [G] COG0395 ABC-type sugar transport system, permease component Length = 276 Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 79/253 (31%), Positives = 138/253 (54%), Gaps = 2/253 (0%) Query: 28 VPFYFLLANSVKSYSEILSDSSALPTVFQWNNYAEAWKATDFPHAFXXXXXXXXXXXXXX 87 +PFY LL S+K+ + S P ++N++EAW+ ++F Sbjct: 25 IPFYILLTTSLKAKGD-YSSKWIFPADISFHNFSEAWERASLGNSFINTMIITGFSALLL 83 Query: 88 AFLCSMCAYKMVRNNSRYNRILYVALVAAMVIPFQAIMIPLVQIVSRLGVMDSTAGLILA 147 S+ AY + R ++ N+ ++ L++ M+IP M+PL ++V G++++ A I Sbjct: 84 IIFGSLAAYPLARRETKLNKAVFALLISIMIIPPLTSMVPLYRMVVDAGMVNTHAIAIFI 143 Query: 148 YLGFGAPMTVFLLHGFVKS-VPIDIEEASRVDGSSPYGTFFRVVLPLMQPIIVTVIILNT 206 P+TVFL GF++S +P ++ EA+R+DG+ FF +V PL++PI T+ I++ Sbjct: 144 NTAAYMPLTVFLYSGFIRSTIPKELVEAARIDGAGMLKIFFTIVFPLLKPITATICIISC 203 Query: 207 LWIWNDYLMPSLILQSPALRTIPIATYTFFGQYTKQWDLALPGLVLGITPVVLFFLLMQK 266 ++IWNDY LQ ++T+ +A FFG+ L ++ + P+V+ FL +QK Sbjct: 204 VFIWNDYQFAIFFLQDQKVQTLTVAMAGFFGENANNLHLVAAAALMAMLPMVVLFLALQK 263 Query: 267 YIIEGIAQGSVKG 279 Y I G++ G+VKG Sbjct: 264 YFIAGLSSGAVKG 276 >BH1119 [G] COG0395 ABC-type sugar transport system, permease component Length = 281 Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 81/256 (31%), Positives = 139/256 (54%), Gaps = 7/256 (2%) Query: 29 PFYFLLANSVKSYSEILSDSSAL-PTVFQWNNYAEAWKA---TDFPHAFXXXXXXXXXXX 84 P +++A+S+K SEI S +S+L P+ F W+NY + W T F F Sbjct: 27 PILWMVASSLKPASEIFSQASSLIPSEFVWSNYPDGWAGFGRTGFDIYFKNSFIITTSVV 86 Query: 85 XXXAFLCSMCAYKMVRNNSRYNRILYVALVAAMVIPFQAIMIPLVQIVSRLGVMDSTAGL 144 S+ AY R ++ ++L+ L+A +++P Q +IP + LG +++ L Sbjct: 87 IGAILSSSIVAYGFARLQFKFKKVLFACLIATVMLPVQITLIPQYILFHNLGWVNTFYPL 146 Query: 145 IL-AYLGFGAPMTVFLLHGFVKSVPIDIEEASRVDGSSPYGTFFRVVLPLMQPIIVTVII 203 I+ A+LG G P +FLL F++ +P +++EA+ +DG S +G F+RV+LPL++P +VTV I Sbjct: 147 IVPAFLG-GTPFFIFLLIQFIRGIPRELDEAAIIDGCSTFGVFWRVILPLLKPALVTVAI 205 Query: 204 LNTLWIWNDYLMPSLILQSPALRTIPIATYTFF-GQYTKQWDLALPGLVLGITPVVLFFL 262 +W W+D+L P + L ++T+ + F + W L L + P + FL Sbjct: 206 FAFMWTWDDFLAPLIYLNKTDIQTVALGLRNFMDAESGTSWGALLAMSTLSLLPQFIIFL 265 Query: 263 LMQKYIIEGIAQGSVK 278 Q+Y++EGI+ +K Sbjct: 266 FFQRYLVEGISTTGLK 281 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.327 0.141 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,442,653 Number of extensions: 609823 Number of successful extensions: 2436 Number of sequences better than 1.0e-05: 169 Number of HSP's gapped: 2268 Number of HSP's successfully gapped: 169 Length of query: 279 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 174 Effective length of database: 26,268,361 Effective search space: 4570694814 Effective search space used: 4570694814 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 115 (48.9 bits)