BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0105.0003.p (293 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Cgl2407 [G] COG1175 ABC-type sugar transport systems, permease c... 196 4e-50 MYPU_1010 [G] COG1175 ABC-type sugar transport systems, permease... 194 2e-49 SP1896 [G] COG1175 ABC-type sugar transport systems, permease co... 156 4e-38 Rv2040c [G] COG1175 ABC-type sugar transport systems, permease c... 136 4e-32 MT2100 [G] COG1175 ABC-type sugar transport systems, permease co... 136 4e-32 >Cgl2407 [G] COG1175 ABC-type sugar transport systems, permease components Length = 281 Score = 196 bits (498), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 113/282 (40%), Positives = 172/282 (60%), Gaps = 15/282 (5%) Query: 14 IFVGPTSXXXXXXXXXXXXXXXYYSFTSWNGISRHVGWTGLRNYIHIFTKDPSFLNSFWF 73 +FV PT + SFT + I+ + W G+ NY+ F++ F+++F F Sbjct: 11 VFVLPTLLAFMIAFLVPFIVGFFLSFTKFTTIT-NAKWVGIDNYVKAFSQREGFISAFGF 69 Query: 74 TAKFTFFGLVLTNLLGFMLAYVLTRKLFTRNVLRTVFFVPHVIGGLLLGFIWQFIF--VR 131 T ++ N+ F+LA++LTRKL N RTVFF+P++IGG++LG+ WQ + V Sbjct: 70 TVLVVIVSVITVNIFAFLLAWLLTRKLRGTNFFRTVFFMPNLIGGIVLGYTWQTMINAVL 129 Query: 132 GFASVGQATGWSFFNLPWLGTGATSFWAIVIVFVWQNAGYLMVIYISAINNVPQSLIEAS 191 + + W F + ++++ WQ GY+M+IYI+ + NVP LIEA+ Sbjct: 130 SHYATTISADWKF-----------GYAGLIMLLNWQLIGYMMIIYIAGLQNVPPELIEAA 178 Query: 192 KVDGAGRMQALRHVTIPLVMPAVTVCLFLSISWSFKLFDLNLSLTKGGPFKATESVALNI 251 ++DG + + LRHVTIP+VMP++T+CLFL++S SFKLFD NL+LT G P TE VALNI Sbjct: 179 ELDGVNKWEMLRHVTIPMVMPSITICLFLTLSNSFKLFDQNLALTNGAPGGQTEMVALNI 238 Query: 252 YNEAYT-ISRFGMGSAKAMIFFVIVAVISLLQVRATKKREVE 292 N + ++ G+G AKA+IF V+V VI+ Q+RAT+ +E+E Sbjct: 239 INTLFNRMNVEGVGQAKAVIFVVVVVVIAYFQLRATRSKEIE 280 >MYPU_1010 [G] COG1175 ABC-type sugar transport systems, permease components Length = 283 Score = 194 bits (493), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 112/261 (42%), Positives = 160/261 (61%), Gaps = 15/261 (5%) Query: 38 SFTSW--NGISRHVGWTGLRNYIHIFTKDPSFLNSFWFTAKFTFFGLVLTNLLGFMLAYV 95 SFT W + W G NY I DP F++S W+T+ FT L+LTN GF AY Sbjct: 33 SFTDWFKEQLIFEGKWIGFNNY-KIAITDPRFIHSIWYTSVFTLLSLILTNSFGFGFAYA 91 Query: 96 LTRKLFTRNVLRTVFFVPHVIGGLLLGFIWQFIFVRGFASVGQATGWSFFNLPWLGTGAT 155 L++K+ N+ R VFF+P++IGGL+LG++WQ IF +S+ F + G Sbjct: 92 LSKKIAGTNIFRGVFFLPNMIGGLILGYLWQLIFDNALSSI-------FSHSLRFGNKWE 144 Query: 156 SFWAIVIVFVWQNAGYLMVIYISAINNVPQSLIEASKVDGAGRMQALRHVTIPLVMPAVT 215 + A+ +V+ WQ AGY+MVIYI+A+ NV +SL E++K++G G + V +P +MPA+T Sbjct: 145 AMLAMSMVYTWQMAGYIMVIYIAALQNVNKSLSESAKIEGCGVFKHFFSVILPSIMPAIT 204 Query: 216 VCLFLSISWSFKLFDLNLSLTKGGPFKATESVALNIYNEAYTIS---RFGMGSAKAMIFF 272 + LFL +S SF++FD NL+LTKG T +A NIY A+ + FG+ AK+ IF Sbjct: 205 IVLFLLVSRSFQMFDQNLALTKGD--GQTGLIAYNIYASAFVSAYQESFGIAQAKSFIFV 262 Query: 273 VIVAVISLLQVRATKKREVEL 293 VIVA IS+ QV TKK EV++ Sbjct: 263 VIVAAISVTQVYITKKFEVQV 283 >SP1896 [G] COG1175 ABC-type sugar transport systems, permease components Length = 296 Score = 156 bits (395), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 85/256 (33%), Positives = 147/256 (57%), Gaps = 1/256 (0%) Query: 36 YYSFTSWNGISRHVGWTGLRNYIHIFTKDPSFLNSFWFTAKFTFFGLVLTNLLGFMLAYV 95 +YSFT+W G++ + + GL N+ +F DP F+N+ FTA +V LG +A V Sbjct: 42 FYSFTNWTGLTYNYKFVGLNNFKLLFM-DPKFMNAIGFTAIIAIAMVVGEIALGIFIARV 100 Query: 96 LTRKLFTRNVLRTVFFVPHVIGGLLLGFIWQFIFVRGFASVGQATGWSFFNLPWLGTGAT 155 L K+ + R FF P V+ GL + I++ +F G ++G A FF LGT Sbjct: 101 LNSKIKGQTFFRAWFFFPAVLSGLTVALIFKQVFNYGLPAIGNALHIEFFQTSLLGTKWG 160 Query: 156 SFWAIVIVFVWQNAGYLMVIYISAINNVPQSLIEASKVDGAGRMQALRHVTIPLVMPAVT 215 + +A V V +WQ ++I+++ + ++P + EA+++DGA Q ++ +P ++P+V+ Sbjct: 161 AIFAAVFVLLWQGVAMPIIIFLAGLQSIPTEITEAARIDGATSKQVFWNIELPYLLPSVS 220 Query: 216 VCLFLSISWSFKLFDLNLSLTKGGPFKATESVALNIYNEAYTISRFGMGSAKAMIFFVIV 275 + L++ FD ++T GGP AT S+ L +YN A+ ++FG +A A+I F ++ Sbjct: 221 MVFILALKGGLTAFDQVFAMTGGGPNNATTSLGLLVYNYAFKNNQFGYANAIAVILFFLI 280 Query: 276 AVISLLQVRATKKREV 291 VIS++Q+R +KK E+ Sbjct: 281 VVISIIQLRVSKKFEI 296 >Rv2040c [G] COG1175 ABC-type sugar transport systems, permease components Length = 300 Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 85/282 (30%), Positives = 151/282 (53%), Gaps = 4/282 (1%) Query: 14 IFVGPTSXXXXXXXXXXXXXXXYYSFTSWNGISRHVGWTGLRNYIHIFTKDPSFLNSFWF 73 +FV P Y SF W+ + H + L N+ ++FT DP FL + Sbjct: 14 MFVAPNLAAVVVFMLFPLGFSLYMSFQKWD-LFTHATFVRLDNFRNLFTSDPLFLIAVVN 72 Query: 74 TAKFTFFGLVLTNLLGFMLAYVLTRKLFTRNVLRTVFFVPHVIGGLLLGFIWQFIFVRGF 133 TA +T +V T ++ ++A L RK+ ++ RTV F+P I +++ +WQF+F Sbjct: 73 TAVYTVGTVVPTVIVSLVVAAFLNRKIKGISLFRTVVFLPLAISSVVMAVVWQFVFNTDN 132 Query: 134 ASVGQATGW-SFFNLPWLGTGATSFWAIVIVFVWQNAGYLMVIYISAINNVPQSLIEASK 192 + GW +PWL + ++ +V VW++ + V+ ++A+ VP+++ EA++ Sbjct: 133 GLLNIMLGWLGIGPIPWLIEPRWAMVSLCLVSVWRSVPFATVVLLAAMQGVPETVYEAAR 192 Query: 193 VDGAGRMQALRHVTIPLVMPAVTVCLFLSISWSFKLFDLNLSLT--KGGPFKATESVALN 250 +DGAG ++ +T+PL+ A++ + +SI +F+ FDL LT GGP AT + + Sbjct: 193 IDGAGEIRQFVSITVPLIRGALSFVVVISIIHAFQAFDLVYVLTGANGGPETATYVLGIM 252 Query: 251 IYNEAYTISRFGMGSAKAMIFFVIVAVISLLQVRATKKREVE 292 ++ A++ FG SA A + F I+ V+++LQ+R T +R E Sbjct: 253 LFQHAFSFLEFGYASALAWVMFAILLVLTVLQLRITHRRSWE 294 >MT2100 [G] COG1175 ABC-type sugar transport systems, permease components Length = 300 Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 85/282 (30%), Positives = 151/282 (53%), Gaps = 4/282 (1%) Query: 14 IFVGPTSXXXXXXXXXXXXXXXYYSFTSWNGISRHVGWTGLRNYIHIFTKDPSFLNSFWF 73 +FV P Y SF W+ + H + L N+ ++FT DP FL + Sbjct: 14 MFVAPNLAAVVVFMLFPLGFSLYMSFQKWD-LFTHATFVRLDNFRNLFTSDPLFLIAVVN 72 Query: 74 TAKFTFFGLVLTNLLGFMLAYVLTRKLFTRNVLRTVFFVPHVIGGLLLGFIWQFIFVRGF 133 TA +T +V T ++ ++A L RK+ ++ RTV F+P I +++ +WQF+F Sbjct: 73 TAVYTVGTVVPTVIVSLVVAAFLNRKIKGISLFRTVVFLPLAISSVVMAVVWQFVFNTDN 132 Query: 134 ASVGQATGW-SFFNLPWLGTGATSFWAIVIVFVWQNAGYLMVIYISAINNVPQSLIEASK 192 + GW +PWL + ++ +V VW++ + V+ ++A+ VP+++ EA++ Sbjct: 133 GLLNIMLGWLGIGPIPWLIEPRWAMVSLCLVSVWRSVPFATVVLLAAMQGVPETVYEAAR 192 Query: 193 VDGAGRMQALRHVTIPLVMPAVTVCLFLSISWSFKLFDLNLSLT--KGGPFKATESVALN 250 +DGAG ++ +T+PL+ A++ + +SI +F+ FDL LT GGP AT + + Sbjct: 193 IDGAGEIRQFVSITVPLIRGALSFVVVISIIHAFQAFDLVYVLTGANGGPETATYVLGIM 252 Query: 251 IYNEAYTISRFGMGSAKAMIFFVIVAVISLLQVRATKKREVE 292 ++ A++ FG SA A + F I+ V+++LQ+R T +R E Sbjct: 253 LFQHAFSFLEFGYASALAWVMFAILLVLTVLQLRITHRRSWE 294 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.331 0.142 0.449 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,040,525 Number of extensions: 711115 Number of successful extensions: 2999 Number of sequences better than 1.0e-05: 180 Number of HSP's gapped: 2854 Number of HSP's successfully gapped: 181 Length of query: 293 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 187 Effective length of database: 26,153,027 Effective search space: 4890616049 Effective search space used: 4890616049 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 115 (48.9 bits)