BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0101.0015.p (209 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value all2672 [V] COG1131 ABC-type multidrug transport system, ATPase ... 180 1e-45 sll0489 [V] COG1131 ABC-type multidrug transport system, ATPase ... 162 5e-40 alr1619 [V] COG1131 ABC-type multidrug transport system, ATPase ... 154 8e-38 sll0415 [V] COG1131 ABC-type multidrug transport system, ATPase ... 148 5e-36 TVN0022 [V] COG1131 ABC-type multidrug transport system, ATPase ... 147 9e-36 >all2672 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 293 Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 88/197 (44%), Positives = 134/197 (68%), Gaps = 2/197 (1%) Query: 1 MFGLLGRNGAGKTTLMRVLATLLHKSGGSVTVCGIP-IEQSKEVRKLIGYLPQDFSIYPG 59 +FGLLG NGAGK++LMR LATL GS+ + G+ ++ + R ++GYLPQDF +YP Sbjct: 29 IFGLLGPNGAGKSSLMRTLATLQDADSGSIELDGVNFLKNPQSARSILGYLPQDFGVYPS 88 Query: 60 MTVYAAMNYLGILSE-LPKAARKERIFALLKRVNLEDCLNLKVKALSGGMKRRLGIAQAI 118 ++ ++ L + + R+E + L+ VNL + K+ SGGM++R GIAQA+ Sbjct: 89 VSAEDLLDQLAVFKGFIHHQQRREIVAQQLQLVNLYEQRQQKLGTFSGGMRQRFGIAQAL 148 Query: 119 LHDPQILIVDEPTAGLDPEERIRFRDLLCEIAENRIVILSTHIVEDIEKTCQNIAVLDKG 178 L P+++IVDEPTAGLDP ERIRF +LL EI+++R+++LSTHIVED+ + C N+A++++G Sbjct: 149 LGSPKLVIVDEPTAGLDPAERIRFHNLLSEISQDRVLLLSTHIVEDVAELCPNMAIMNRG 208 Query: 179 QIIYQGALQHFIGNERG 195 +I+ G+ Q I G Sbjct: 209 EILRSGSPQALINALNG 225 >sll0489 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 342 Score = 162 bits (409), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 76/196 (38%), Positives = 127/196 (64%), Gaps = 1/196 (0%) Query: 1 MFGLLGRNGAGKTTLMRVLATLLHKSGGSVTVCGIPI-EQSKEVRKLIGYLPQDFSIYPG 59 + G LG NGAGKTT MR+LA + + G+V V G + EQS VRK IGYLP++ +Y Sbjct: 29 ILGFLGPNGAGKTTTMRILAGYIPATTGTVRVAGFDVHEQSLAVRKRIGYLPENPPLYGD 88 Query: 60 MTVYAAMNYLGILSELPKAARKERIFALLKRVNLEDCLNLKVKALSGGMKRRLGIAQAIL 119 MTV + +N++ + + R++R+ ++R L + + ++ LS G K+R+GIAQAI+ Sbjct: 89 MTVASFLNFVASIKGVKPGDRRQRVIWAMERCQLTEKRKVLIRKLSKGFKQRVGIAQAIV 148 Query: 120 HDPQILIVDEPTAGLDPEERIRFRDLLCEIAENRIVILSTHIVEDIEKTCQNIAVLDKGQ 179 HDP ++I+DEPT GLDP++ I R+L+ +AE+ +ILSTHI+ ++ TC + ++++G+ Sbjct: 149 HDPAVIILDEPTVGLDPKQIIEVRNLIKSLAEDHTIILSTHILPEVSMTCDRVTIINQGR 208 Query: 180 IIYQGALQHFIGNERG 195 ++ + + +G Sbjct: 209 VVATNTPDNLLAELKG 224 >alr1619 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 359 Score = 154 bits (389), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 12/191 (6%), Positives = 32/191 (16%), Gaps = 1/191 (0%) Query: 1 MFGLLGRNGAGKTTLMRVLATLLHKSGGSVTVCGIPI-EQSKEVRKLIGYLPQDFSIYPG 59 M ++ N G L + G + + ++ + Sbjct: 29 MVAVVKANAYGHGLLETARTLPDADAFGVARLEEALRLRAGGITKPVLLLEGFFDARDLP 88 Query: 60 MTVYAAMNYLGILSELPKAARKERIFALLKRVNLEDCLNLKVKALSGGMKRRLGIAQAIL 119 + E A + + + D ++ + Sbjct: 89 TISAQHFHTAVHNEEQLAALEEASLDEPVTVWMKLDTGMHRLGVRPEQAEAFYHRLTQCK 148 Query: 120 HDPQILIVDEPTAGLDPEERIRFRDLLCEIAENRIVILSTHIVEDIEKTCQNIAVLDKGQ 179 + Q + + A D + L + Sbjct: 149 NVRQPVNIVSHFARADEPKCGATEKQLAIFNTFCEGKPGQRSIAASGGILLWPQSHFDWV 208 Query: 180 IIYQGALQHFI 190 Sbjct: 209 RPGIILYGVSP 219 >sll0415 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 354 Score = 148 bits (374), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 72/199 (36%), Positives = 129/199 (64%), Gaps = 4/199 (2%) Query: 2 FGLLGRNGAGKTTLMRVLATLLHKSGGSVTVCGIPIEQSKEVRKLIGYLPQDFSIYPGMT 61 FGLLG NGAGKTTL+++L ++ SGG T+ G PI ++ ++ +GYLP++ Y +T Sbjct: 83 FGLLGPNGAGKTTLLKILLGVIRASGGRGTLLGKPI-GDRQTKQRVGYLPENAYFYDFLT 141 Query: 62 VYAAMNYLGILSELPKAARKERIFALLKRVNL--EDCLNLKVKALSGGMKRRLGIAQAIL 119 + ++Y+G L ++ K R+ RI A+ V L + +++ S GM +R+G+AQA++ Sbjct: 142 AWEFLDYIGSLFQIGKQERQRRILAMCDLVGLAQKTAKKKQLRQYSKGMLQRVGMAQALI 201 Query: 120 HDPQILIVDEPTAGLDPEERIRFRDLLCEIAEN-RIVILSTHIVEDIEKTCQNIAVLDKG 178 +DP+++ +DEP +GLDP R + R+++ + E + + ++HI+ D+E+ C IA+L +G Sbjct: 202 NDPEVVFLDEPMSGLDPLGRYQVREIILSLKEQGKTIFFNSHILADVEQICDRIAILARG 261 Query: 179 QIIYQGALQHFIGNERGLE 197 +++ G+L +GN+ G E Sbjct: 262 ELLCSGSLAEVLGNDEGYE 280 >TVN0022 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 259 Score = 147 bits (372), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 132/208 (63%), Gaps = 6/208 (2%) Query: 1 MFGLLGRNGAGKTTLMRVLATLLHKSGGSVTVCGIPIEQSK-EVRKLIGYLPQDFSIYPG 59 ++G+LG NG+GKTTLM++L +LL K G V+VCG+ +++ + +++++ GY+P+ +Y Sbjct: 32 IYGILGPNGSGKTTLMKILVSLLSKKSGRVSVCGLDVDKDQMKIKEIAGYIPETPVLYES 91 Query: 60 MTVYAAMNYLGILSELPKAARKERIFALLKRVNLEDCLNLKVKALSGGMKRRLGIAQAIL 119 MT +++G + +P + R+ AL+ +++D LN + +LS G K+++ I A++ Sbjct: 92 MTPLELFDFVGSVRHIPVDSYARRLNALIDAFSIKDYLNEFIGSLSFGNKQKVAIISALV 151 Query: 120 HDPQILIVDEPTAGLDPEERIRFRDLLCEIAE-NRIVILSTHIVEDIEKTCQNIAVLDKG 178 HDP++LIVDE GLDP F+D+L ++ +IV+ STHI+E E C ++A+L +G Sbjct: 152 HDPKVLIVDEGMNGLDPRSARIFKDILMDMKNRGKIVVFSTHILEIAENLCDSVAILYEG 211 Query: 179 QIIYQGALQHFIG----NERGLEEAYMK 202 I+ G ++ N + LE+ ++K Sbjct: 212 SIVANGTIRDLESSAPENSQNLEDIFLK 239 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.322 0.141 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,671,807 Number of extensions: 642997 Number of successful extensions: 7544 Number of sequences better than 1.0e-05: 2095 Number of HSP's gapped: 5012 Number of HSP's successfully gapped: 2244 Length of query: 209 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 107 Effective length of database: 26,614,363 Effective search space: 2847736841 Effective search space used: 2847736841 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 113 (48.1 bits)