BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0101.0008.p (310 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value TM1469 [KG] COG1940 Transcriptional regulator/sugar kinase 89 8e-18 BS_glcK [KG] COG1940 Transcriptional regulator/sugar kinase 82 1e-15 all5002 [KG] COG1940 Transcriptional regulator/sugar kinase 79 8e-15 BH0797 [KG] COG1940 Transcriptional regulator/sugar kinase 77 4e-14 BH0700 [KG] COG1940 Transcriptional regulator/sugar kinase 72 2e-12 >TM1469 [KG] COG1940 Transcriptional regulator/sugar kinase Length = 317 Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 83/316 (26%), Positives = 120/316 (37%), Gaps = 24/316 (7%) Query: 3 QVIGVDIGGTAVKGLVIDETGAVWAEARRDTDARQGREAILGKLEALVRELL--EVCPLV 60 ++IGVD+GGT ++ E G + + RDT G+E ++ ++ + E+ E P V Sbjct: 5 KLIGVDLGGTTFSVGLVSEDGKILKKVTRDTLVENGKEDVIRRIAETILEVSDGEEAPYV 64 Query: 61 QAIGIASAGRVNTDTGQVVYATDNLQGWQGLHLAEWXXXXXXXXXXXXXXXXXXXXXXXX 120 GI S G ++ + G +V + N W + L + Sbjct: 65 ---GIGSPGSIDRENG-IVRFSPNFPDWHNVPLTDELAKRTGKKVFLENDANAFVLGEKW 120 Query: 121 XXXXRGHQDXXXXXXXXXXXXAYMIHGILGRGIHWNGGEFGHSVLVPGGLPCNCGKQGCV 180 RGH + HG L G G E GH V+ P G CNCG +GC+ Sbjct: 121 FGAGRGHDHIVALTLGTGIGGGVVTHGYLLTGRDGIGAELGHVVVEPNGPMCNCGTRGCL 180 Query: 181 EQYVSGSAXXXXXXXXXXXXYGH------GSELMAD-------ARAGDSGALQVLERFAA 227 E S +A + GS AD AR GD AL + +R Sbjct: 181 EAVASATAIRRFLREGYKKYHSSLVYKLAGSPEKADAKHLFDAARQGDRFALMIRDRVVD 240 Query: 228 DLAVVLGNISVTFDPARIIIGGGVIHEREIWWPLLKNKLQDXXX-----XXXXXXXXXXN 282 LA + F+P +IIGGG+ EI + L+ K+ D Sbjct: 241 ALARAVAGYIHIFNPEIVIIGGGISRAGEILFGPLREKVVDYIMPSFVGTYEVVASPLVE 300 Query: 283 RAGCFGAAKLALERFG 298 AG GAA + ER G Sbjct: 301 DAGILGAASIIKERIG 316 >BS_glcK [KG] COG1940 Transcriptional regulator/sugar kinase Length = 321 Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 73/276 (26%), Positives = 117/276 (42%), Gaps = 21/276 (7%) Query: 6 GVDIGGTAVKGLVIDETGAV---WAEARRDTDARQGREAILGKLEALVRELLEVCPLVQA 62 G+D+GGT +K I++ G + W E D I +++ + EL + +++ Sbjct: 8 GIDLGGTTIKLAFINQYGEIQHKW-EVPTDKTGDTITVTIAKTIDSKLDELQKPKHIIKY 66 Query: 63 IGIASAGRVNTDTGQVVYATDNLQGWQGLHLAEWXXXXXXXXXXXXXXXXXXXXXXXXXX 122 IG+ + G V+ G VVY T NL GW+ L Sbjct: 67 IGMGAPGPVDMAAG-VVYETVNL-GWKNYALKNHLETETGIPAVIENDANIAALGEMWKG 124 Query: 123 XXRGHQDXXXXXXXXXXXXAYMIHGILGRGIHWNGGEFGHSVLVP-GGLPCNCGKQGCVE 181 G +D + +G + GI+ GGE GH +P GG PCNCGK GC+E Sbjct: 125 AGDGAKDVILVTLGTGVGGGIIANGEILHGINGAGGEIGHICSIPEGGAPCNCGKTGCIE 184 Query: 182 QYVSGS----------AXXXXXXXXXXXXYGHGSELMADARAGDSGALQVLERFAADLAV 231 S + A ++ A D AL+V++ A L + Sbjct: 185 TIASATGIVRIAKGKIANAKKTTRLKATEQLSARDVFEAAGENDEIALEVVDYVAKHLGL 244 Query: 232 VLGNISVTFDPARIIIGGGVIHEREIWWPLLKNKLQ 267 VLGN++ + +P++I++GGGV E LL++K++ Sbjct: 245 VLGNLASSLNPSKIVLGGGVSRAGE----LLRSKVE 276 >all5002 [KG] COG1940 Transcriptional regulator/sugar kinase Length = 311 Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 79/304 (25%), Positives = 116/304 (38%), Gaps = 18/304 (5%) Query: 3 QVIGVDIGGTAVKGLVIDETGAVWAEARRDTDARQGREAILGKLEALVRELLEVCPLVQ- 61 QVIG+D+GGTA+K + G T EA+ +V + ++ P + Sbjct: 18 QVIGIDLGGTAIKLGRFSKDGTCSQSLTVATPQPATPEAVF---LVMVDAIAQIDPDNET 74 Query: 62 -AIGIASAGRVNTDTGQVVYATDNLQGWQGLHLAEWXXXXXXXXXXXXXXXXXXXXXXXX 120 AIG+ + G + G++ NL W+ + LA+W Sbjct: 75 IAIGVGTPGPADAQ-GRIAQIAINLPQWENVPLADWLEAKTNKPTVIENDANCAGIAEAW 133 Query: 121 XXXXRGHQDXXXXXXXXXXXXAYMIHGILGRGIHWNGGEFGHSVLVPGGLPCNCGKQGCV 180 R Q+ A + G L G GE G L P G C G G + Sbjct: 134 LGAGRHCQNFIMLTLGTGVGGAIFLDGKLFVGHRGAAGELGLITLQPDGPMCKSGNPGSL 193 Query: 181 EQYVSGSAXXXXXXXXXXXXYGHGSELMADARAGDSGALQVLERFAADLAVVLGNISVTF 240 EQY S A +EL A+AGD ALQ + + +L + L ++ Sbjct: 194 EQYTSIKAIRRLTGK-------EPAELGMLAQAGDPEALQFWQEYGQNLGIGLTSLIYVL 246 Query: 241 DPARIIIGGGVIHEREIWWPLLKNKLQDXXXXXXXX-----XXXXXNRAGCFGAAKLALE 295 P I++GGGV E + P LK +++ N AG GAA+LA E Sbjct: 247 TPQAIVLGGGVSASCEFFLPTLKAEIEKRVMSTSRAGLQILPAELGNSAGMVGAARLAWE 306 Query: 296 RFGQ 299 +FG Sbjct: 307 KFGN 310 >BH0797 [KG] COG1940 Transcriptional regulator/sugar kinase Length = 293 Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 59/263 (22%), Positives = 111/263 (42%), Gaps = 3/263 (1%) Query: 5 IGVDIGGTAVKGLVIDETGAVWAEARRDTDARQGREAILGKLEALVRELLEVCPLVQAIG 64 +G+D+GGT +K ++ + G + + T+A QG E ++ K+ +L ++ + P IG Sbjct: 3 VGIDLGGTKIKAALVSDAGEIISVQECPTEAAQGPEEVMNKMMSLTEKVTDHQPFA-GIG 61 Query: 65 IASAGRVNTDTGQVVYATDNLQGWQGLHLAEWXXXXXXXXXXXXXXXXXXXXXXXXXXXX 124 I + G +++ G ++ + NL GW +HL + Sbjct: 62 IGAPGPLSSTEGTIL-SPPNLPGWDHIHLVDRFQEQFQCPVKLDNDANVAALAEALLGSG 120 Query: 125 RGHQDXXXXXXXXXXXXAYMIHGILGRGIHWNGGEFGHSVLVPGGLPCNCGKQGCVEQYV 184 +G Y++ G + G GE G+ ++ P G G +E Sbjct: 121 QGFTSVFYLTISTGIGGGYVLDGSIVHGASDYAGEIGNMIVQPNGYQHANLNPGSLEGLA 180 Query: 185 SGSAXXXXXXXXXXXXYGHGSELMADARAGDSGALQVLERFAADLAVVLGNISVTFDPAR 244 SG+A G E+ R GD +++E LA+ + NI+ T +P Sbjct: 181 SGTAIGRMARERFGVE-GGTREVFDQIRRGDHDMQRLVEEAMDYLAIGIANIAHTINPDV 239 Query: 245 IIIGGGVIHEREIWWPLLKNKLQ 267 ++GGGV++ ++ P++K K+ Sbjct: 240 FVLGGGVMNADDLILPIVKEKVS 262 >BH0700 [KG] COG1940 Transcriptional regulator/sugar kinase Length = 388 Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 4/124 (3%) Query: 144 MIHGILGRGIHWNGGEFGHSVLVPGGLPCNCGKQGCVEQYVSGSAXXXXXXXXXXXXYGH 203 ++H + +G H GE GH ++VP G PC CG +GC E Y S A + Sbjct: 221 IVHNAIYKGFHGYAGEVGHMIIVPEGKPCRCGNKGCWELYASEKALYQEISESTKREHVD 280 Query: 204 GSELMADARAGDSGALQVLERFAADLAVVLGNISVTFDPARIIIGGGVIHEREIWWPLLK 263 ++A AGD L+ L++F ++ L NI +++P I+I G++ P ++ Sbjct: 281 RDVVLALIEAGDEETLKKLDQFIYYFSLGLNNIINSYNPETIVISSGLMPH----LPNIE 336 Query: 264 NKLQ 267 +K+Q Sbjct: 337 HKIQ 340 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.139 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,255,165 Number of extensions: 645751 Number of successful extensions: 2662 Number of sequences better than 1.0e-05: 47 Number of HSP's gapped: 2633 Number of HSP's successfully gapped: 47 Length of query: 310 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 204 Effective length of database: 26,153,027 Effective search space: 5335217508 Effective search space used: 5335217508 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 116 (49.3 bits)