BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0101.0006.p (239 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP1330 [G] COG3010 Putative N-acetylmannosamine-6-phosphate epim... 178 6e-45 SP1685 [G] COG3010 Putative N-acetylmannosamine-6-phosphate epim... 167 1e-41 STM3337 [G] COG3010 Putative N-acetylmannosamine-6-phosphate epi... 130 1e-30 STM1129 [G] COG3010 Putative N-acetylmannosamine-6-phosphate epi... 129 4e-30 >SP1330 [G] COG3010 Putative N-acetylmannosamine-6-phosphate epimerase Length = 233 Score = 178 bits (452), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 96/231 (41%), Positives = 138/231 (59%), Gaps = 5/231 (2%) Query: 1 VGTLNTIIQKLHHGLIVSCQALPGEPLYXXXXXXX--XXXXXXXXXXVGIRANGAADVRA 58 + T I ++ G+IVSCQALPGE LY VGIRAN D++A Sbjct: 4 IWTKEKFISQVQGGVIVSCQALPGEALYNEEFSLMPFMAKAALEAGAVGIRANSVRDIKA 63 Query: 59 IKSAVSLPVIGIVKRDYPGSAVYITPTLREIEELLEAGADMIALDATGQKRPEDCTLEQM 118 I+ V LP+IGI+KRDYP YIT T++E++EL+E G +IA DAT + R + + + Sbjct: 64 IQKVVDLPIIGIIKRDYPPQEPYITATMKEVDELVECGTTVIAFDATLRPRYDGLVVSEF 123 Query: 119 VAFLNRN--GTASMGDISILEEAIHAEALGVSCVSTTLSGYTPYSLQQEGPNFELLQKAV 176 + + M D+S L+E ++A GV V TTLSGYT S+Q + P+FEL++K Sbjct: 124 IKKIKEKYPNQLLMADVSNLDEGLYAFKSGVDFVGTTLSGYTSTSVQSDEPDFELMKKLA 183 Query: 177 ERLSIPVMAEGRMIEPDQVRKAMDLGAYAAVVGSAITRPQLITGRFAAAIR 227 + +IPV+AEG++ P+Q++KA LG + V+G AITRP+ I RF I+ Sbjct: 184 D-FNIPVIAEGKIHYPEQLKKAYSLGVTSVVIGGAITRPKEIAQRFINVIK 233 >SP1685 [G] COG3010 Putative N-acetylmannosamine-6-phosphate epimerase Length = 232 Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 90/227 (39%), Positives = 135/227 (59%), Gaps = 5/227 (2%) Query: 5 NTIIQKLHHGLIVSCQALPGEPLYXXXXXXXXXXXXXXXX--XVGIRANGAADVRAIKSA 62 +I+++ G+IVSCQALP EPLY VGIRAN D++ IK Sbjct: 7 EALIEQIKDGIIVSCQALPHEPLYTEAGGVIPLLVKAAEQGGAVGIRANSVRDIKEIKEV 66 Query: 63 VSLPVIGIVKRDYPGSAVYITPTLREIEELLEAGADMIALDATGQKRPEDCTLEQMVAFL 122 LP+IGI+KRDYP +IT T++E++EL E ++IALD T ++R + +++ + + Sbjct: 67 TKLPIIGIIKRDYPPQEPFITATMKEVDELAELDIEVIALDCTKRERYDGLEIQEFIRQV 126 Query: 123 NRN--GTASMGDISILEEAIHAEALGVSCVSTTLSGYTPYSLQQEGPNFELLQKAVERLS 180 M D SI EE + A G+ V TTLSGYT YS + +GP+FEL++K + Sbjct: 127 KEKYPNQLLMADTSIFEEGLAAVEAGIDFVGTTLSGYTSYSPKVDGPDFELIKKLCDA-G 185 Query: 181 IPVMAEGRMIEPDQVRKAMDLGAYAAVVGSAITRPQLITGRFAAAIR 227 + V+AEG++ P+Q ++ ++ G VVG AITRP+ IT RF A+++ Sbjct: 186 VDVIAEGKIHTPEQAKQILEYGVRGIVVGGAITRPKEITERFVASLK 232 >STM3337 [G] COG3010 Putative N-acetylmannosamine-6-phosphate epimerase Length = 229 Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 79/215 (36%), Positives = 122/215 (56%), Gaps = 4/215 (1%) Query: 14 GLIVSCQALPGEPLYXXXXXXXXXXXXXXXXXVGIRANGAADVRAIKSAVSLPVIGIVKR 73 GLIVSCQ +PG PL V +R G ++R +S VS+P+IGI+KR Sbjct: 16 GLIVSCQPVPGSPLDKPEIVAAMALAAEQAGAVAVRIEGIDNLRMTRSLVSVPIIGIIKR 75 Query: 74 DYPGSAVYITPTLREIEELLEAGADMIALDATGQKRPEDCTLEQMVAFLNRNGTASMGDI 133 D S V ITP L +++ L +AGA +IA+D T ++RP +E ++A ++ + +M D Sbjct: 76 DLDESPVRITPFLDDVDALAQAGAAIIAVDGTARQRP--VAVEALLARIHHHHLLAMADC 133 Query: 134 SILEEAIHAEALGVSCVSTTLSGYTPYSLQQEGPNFELLQKAVERLSIPVMAEGRMIEPD 193 S +++ + + LG + TT+SGYT +E P+ L+ KA+ V+AEGR P Sbjct: 134 SSVDDGLACQRLGADIIGTTMSGYTTPDTPEE-PDLPLV-KALHDAGCRVIAEGRYNSPA 191 Query: 194 QVRKAMDLGAYAAVVGSAITRPQLITGRFAAAIRR 228 +A+ GA+A VGSAITR + I G + A+++ Sbjct: 192 LAAEAIRYGAWAVTVGSAITRLEHICGWYNDALKK 226 >STM1129 [G] COG3010 Putative N-acetylmannosamine-6-phosphate epimerase Length = 226 Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 123/222 (55%), Gaps = 6/222 (2%) Query: 9 QKLHH--GLIVSCQALPGEPLYXXXXXXXXXXXXXXXXXVGIRANGAADVRAIKSAVSLP 66 Q +H GLIVSCQ +PG P+ V +R G ++R ++ +S+P Sbjct: 9 QSVHENGGLIVSCQPVPGSPMDKPEIVAAMAQAAASAGAVAVRIEGIENLRTVRPHLSVP 68 Query: 67 VIGIVKRDYPGSAVYITPTLREIEELLEAGADMIALDATGQKRPEDCTLEQMVAFLNRNG 126 +IGI+KRD GS V ITP L++++ L +AGAD+IA DA+ + RP D ++ ++ + +G Sbjct: 69 IIGIIKRDLTGSPVRITPYLQDVDALAQAGADIIAFDASFRSRPVD--IDSLLTRIRLHG 126 Query: 127 TASMGDISILEEAIHAEALGVSCVSTTLSGYTPYSLQQEGPNFELLQKAVERLSIPVMAE 186 +M D S + E I G+ + TTLSGYT E P+ ++ + + V+AE Sbjct: 127 LLAMADCSTVNEGISCHQKGIEFIGTTLSGYTGPITPVE-PDLAMVTQ-LSHAGCRVIAE 184 Query: 187 GRMIEPDQVRKAMDLGAYAAVVGSAITRPQLITGRFAAAIRR 228 GR P A++ GA+A VGSAITR + I F+ A++R Sbjct: 185 GRYNTPALAANAIEHGAWAVTVGSAITRIEHICQWFSHAVKR 226 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.134 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,479,156 Number of extensions: 602271 Number of successful extensions: 2951 Number of sequences better than 1.0e-05: 4 Number of HSP's gapped: 2941 Number of HSP's successfully gapped: 4 Length of query: 239 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 136 Effective length of database: 26,499,029 Effective search space: 3603867944 Effective search space used: 3603867944 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 114 (48.5 bits)