BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0101.0004.p (282 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value TM0812 [G] COG0395 ABC-type sugar transport system, permease com... 239 3e-63 STM0812 [I] COG1502 Phosphatidylserine/phosphatidylglycerophosph... 239 3e-63 all4824 [G] COG0395 ABC-type sugar transport system, permease co... 203 3e-52 lin1843 [G] COG0395 ABC-type sugar transport system, permease co... 186 4e-47 lin0219 [G] COG0395 ABC-type sugar transport system, permease co... 182 6e-46 >TM0812 [G] COG0395 ABC-type sugar transport system, permease component Length = 271 Score = 239 bits (611), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 108/248 (43%), Positives = 164/248 (66%) Query: 34 PFLWLLSVSLMPGRNVFSSPPAILPTFIDFDNYVQVWKFMSFPRYISNTVIITALGVVFN 93 PF W+ S G NV+ PP+++P F NYV WK + Y NT+II G + N Sbjct: 23 PFYWIAKTSFEAGGNVYKYPPSLIPYPATFSNYVGAWKTVKLGNYYLNTIIIAGFGTLLN 82 Query: 94 ILLSSLTAYPLAVFHFKGRNIVFSLLIATMIIPSSTAMIVHYLTIQAFQLGNSFLGVVLP 153 +L S + AYPLA FKG+ +V L++ M+IP +IV+YLT++ L N++ GV+LP Sbjct: 83 VLFSLMVAYPLARIDFKGKQLVLFLILLPMMIPVQNTLIVNYLTLRKLGLLNTYTGVILP 142 Query: 154 AAVSVFNIFLMRQTFLGVPSDIRDSGKMDGASELRIFWQLVLPLVKPGIAVIGLLEVMAF 213 AV++F IF+MRQ +L +P D+ ++DGA EL I+W+++ PL+KP IA + + +V+ + Sbjct: 143 QAVTIFGIFMMRQAYLSIPKSFEDAARIDGAGELYIWWKIITPLIKPDIATLVVFQVITW 202 Query: 214 WNNFLWPIVVLEDPGKYPLAAALTYLNGQFSYNFGWIAAGTMISVTPIIVVFLFTQRYYM 273 W+NFLWP++VL D KYPL+ AL YLN F NF + AAG ++++ P++++F+F QRY + Sbjct: 203 WDNFLWPLIVLSDSNKYPLSVALVYLNSTFQVNFRYTAAGIVLAILPVVLLFIFAQRYII 262 Query: 274 EGIAGAIK 281 IAG +K Sbjct: 263 NAIAGGVK 270 >STM0812 [I] COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiol ipin synthases and related enzymes Length = 184 Score = 239 bits (611), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 0/248 (0%), Positives = 0/248 (0%) Query: 34 PFLWLLSVSLMPGRNVFSSPPAILPTFIDFDNYVQVWKFMSFPRYISNTVIITALGVVFN 93 + S P + + + S ++ + + Sbjct: 23 NCAGCELIFEDKISGTKSERPGLKKLLRTLSAGDTLVVWKLDRLGRSMRHLVVLVEELRE 82 Query: 94 ILLSSLTAYPLAVFHFKGRNIVFSLLIATMIIPSSTAMIVHYLTIQAFQLGNSFLGVVLP 153 ++ + F ++ A + + ++ + G Sbjct: 83 RGINFRSLTDSIDTSTPMGRFFFHVMGALAEMERELIVERTKAGLETARAQGRIGGRRPK 142 Query: 154 AAVSVFNIFLMRQTFLGVPSDIRDSGKMDGASELRIFWQLVLPLVKPGIAVIGLLEVMAF 213 Sbjct: 143 202 Query: 214 WNNFLWPIVVLEDPGKYPLAAALTYLNGQFSYNFGWIAAGTMISVTPIIVVFLFTQRYYM 273 Sbjct: 203 262 Query: 274 EGIAGAIK 281 Sbjct: 263 270 >all4824 [G] COG0395 ABC-type sugar transport system, permease component Length = 279 Score = 203 bits (516), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 97/251 (38%), Positives = 160/251 (63%), Gaps = 2/251 (0%) Query: 34 PFLWLLSVSLM-PGRNVFSSPPAILPTFIDFDNYVQVWKFMSFPRYISNTVIITALGVVF 92 P LWL+S +L P N+F SPP +LP DN+ +VW + F +Y+ N+ +++ L V Sbjct: 29 PLLWLISTALKSPTENIFQSPPQLLPNQPTVDNFFKVWNSLPFGQYLYNSTLVSVLTVGL 88 Query: 93 NILLSSLTAYPLAVFHFKGRNIVFSLLIATMIIPSSTAMIVHYLTIQAFQLGNSFLGVVL 152 N+L SL AYPLA F GR+ +F +++T++IP MI Y+ L N++LG++ Sbjct: 89 NLLFCSLAAYPLARLSFPGRDWIFIAIVSTIMIPFQIVMIPLYILTVQLGLRNTYLGMMF 148 Query: 153 PAAVSVFNIFLMRQTFLGVPSDIRDSGKMDGASELRIFWQLVLPLVKPGIAVIGLLEVMA 212 P+ S F IFL+RQ F+GVP +I ++ +MDG+SEL ++W ++LP V+P + + + + Sbjct: 149 PSLASAFGIFLLRQAFMGVPKEIEEAARMDGSSELGLWWHIMLPAVRPALVTLAIFVFIG 208 Query: 213 FWNNFLWPIVVLEDPGKYPLAAALTYLNGQFSYNFGWIAAGTMISVTPIIVVFLFTQRYY 272 W++FLWP++V++D Y L + L G FS ++ +AAG++I++ P++++FL QRY Sbjct: 209 AWSDFLWPLIVIQDENLYTLPLGVAKLAGTFSLDWRLVAAGSVIAIAPVLLLFLILQRYI 268 Query: 273 ME-GIAGAIKG 282 +E I +KG Sbjct: 269 VETDIGSGVKG 279 >lin1843 [G] COG0395 ABC-type sugar transport system, permease component Length = 276 Score = 186 bits (471), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 95/246 (38%), Positives = 145/246 (58%), Gaps = 1/246 (0%) Query: 30 FMMGPFLWLLSVSLMPGRNVFSSPPAILPTFIDFDNYVQVWKFMSFPRYISNTVIITALG 89 FM+ PF+W++ SL + PP I P DN+ +++ M F Y+ NT+II Sbjct: 25 FMILPFIWMVLSSLKTDAEILKIPPTIWPETFTLDNFTKLFTEMDFAIYLKNTLIIVFFS 84 Query: 90 VVFNILLSSLTAYPLAVFHFKGRNIVFSLLIATMIIPSSTAMIVHYLTIQAFQLGNSFLG 149 F + L+++ Y A F FKG+N +F L++ATM+IP MI YL + A L N+ G Sbjct: 85 F-FGLFLNAMAGYGFAKFKFKGKNKLFYLVLATMMIPGQVTMIPVYLLLNAAGLTNTMTG 143 Query: 150 VVLPAAVSVFNIFLMRQTFLGVPSDIRDSGKMDGASELRIFWQLVLPLVKPGIAVIGLLE 209 +VLP V F IFL RQ + D+ ++ ++DGASE IFW++V+P+ +P +AV G+L Sbjct: 144 IVLPGLVGAFGIFLFRQFMSTISDDLLEAARLDGASEFYIFWRIVIPISRPVLAVQGILT 203 Query: 210 VMAFWNNFLWPIVVLEDPGKYPLAAALTYLNGQFSYNFGWIAAGTMISVTPIIVVFLFTQ 269 +A WN+FLWP+++ D Y L+ L L GQ+ N+ AG V PII++F+ Q Sbjct: 204 FIAGWNSFLWPLIIANDEKFYTLSVGLQLLKGQYGSNYALQMAGATFMVIPIILIFMTFQ 263 Query: 270 RYYMEG 275 +Y ++G Sbjct: 264 KYILKG 269 >lin0219 [G] COG0395 ABC-type sugar transport system, permease component Length = 282 Score = 182 bits (462), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 87/247 (35%), Positives = 150/247 (60%) Query: 31 MMGPFLWLLSVSLMPGRNVFSSPPAILPTFIDFDNYVQVWKFMSFPRYISNTVIITALGV 90 M+ PF+W++S + G PP +P N+ QV++ R++ N+V++ + Sbjct: 30 MLMPFVWMISTAFKTGAANMVLPPQFIPKEPTTANFTQVFEMFPMLRFLMNSVVVAVVTT 89 Query: 91 VFNILLSSLTAYPLAVFHFKGRNIVFSLLIATMIIPSSTAMIVHYLTIQAFQLGNSFLGV 150 + +L S+ AY A F GR+ +F L +ATM++P+ MI ++ ++ F +S+ G+ Sbjct: 90 LGQMLFCSMAAYAFARIPFWGRDKLFLLYLATMMVPAQVTMIPQFILMKQFGWLDSYAGL 149 Query: 151 VLPAAVSVFNIFLMRQTFLGVPSDIRDSGKMDGASELRIFWQLVLPLVKPGIAVIGLLEV 210 ++PA SVF FL+RQ F+G+P ++ ++ MDGA+ IF +++LPL KP A +G+L Sbjct: 150 IVPALFSVFGTFLLRQAFMGIPKELEEAAFMDGANHFTIFRKVILPLAKPTFATLGILTF 209 Query: 211 MAFWNNFLWPIVVLEDPGKYPLAAALTYLNGQFSYNFGWIAAGTMISVTPIIVVFLFTQR 270 M WN++LWP++V L L+ L G++ N+G + AG +ISV PI+ V+LF Q+ Sbjct: 210 MQSWNSYLWPLIVTSSQEMATLPLGLSLLQGRYGTNYGLMMAGVLISVIPILAVYLFAQK 269 Query: 271 YYMEGIA 277 Y+++G+A Sbjct: 270 YFIQGMA 276 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.329 0.143 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,373,242 Number of extensions: 679804 Number of successful extensions: 2359 Number of sequences better than 1.0e-05: 159 Number of HSP's gapped: 2218 Number of HSP's successfully gapped: 159 Length of query: 282 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 177 Effective length of database: 26,268,361 Effective search space: 4649499897 Effective search space used: 4649499897 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)