BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0101.0003.p (278 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value TM0811 [G] COG1175 ABC-type sugar transport systems, permease co... 175 6e-44 lin0760 [G] COG1175 ABC-type sugar transport systems, permease c... 147 1e-35 alr0738 [G] COG1175 ABC-type sugar transport systems, permease c... 147 3e-35 slr1202 [G] COG1175 ABC-type sugar transport systems, permease c... 143 3e-34 lin0218 [G] COG1175 ABC-type sugar transport systems, permease c... 142 4e-34 >TM0811 [G] COG1175 ABC-type sugar transport systems, permease components Length = 300 Score = 175 bits (444), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 97/273 (35%), Positives = 151/273 (55%) Query: 6 LFLAAFTFWPIIYGIPLSLTDYSVITETHYVGFENFTRAFQDHNFIISLWNSLVYVLIVP 65 L + F ++P+++GI +S Y ++ E+ Y+G +N+ +D F + NSL+Y+L+VP Sbjct: 26 LLMVLFIYYPLVFGIKISFYQYDIVGESLYIGLKNYVDLLRDPLFWNAFKNSLLYLLVVP 85 Query: 66 VIQVISILMAILVNSRIPGVKMFRTAYYIPVVTSMVAVALIWSWXXXXXXXXXXXXIQAG 125 +Q+ISIL+A+L++ I G +FRT ++PVVT + A+ W W Sbjct: 86 PLQLISILLAVLLDRAIRGRNLFRTLIFLPVVTPITIAAITWQWMYREKGFINFLLQSLH 145 Query: 126 IISGQVSWLSTSTTALYVLMFITMWKXXXXXXXXXXXXXXXVPSDLYEAARVDGANFLKL 185 II +++LS AL+ +MF+TMWK +P +L EAARVDGA ++ Sbjct: 146 IIDEPIAFLSDPKIALFAIMFVTMWKGFGYYMVIYLAGLQSIPRELIEAARVDGAKPSQV 205 Query: 186 IIHVTIPLLRPHILFCTLISVMGAIRVFDEVYILTKGGPGTSTLTSSVYIFQKGLEQFNF 245 VTIPLL+P+ILFC+ +S + A+ VF E+Y +TKGGP +T T ++I+ + E F Sbjct: 206 FFKVTIPLLKPYILFCSTMSSIAALNVFGEIYAMTKGGPVHATETMGIFIYNRAFEYLQF 265 Query: 246 GYXXXXXXXXXXXXXXXXXXXFRLNRKGGVNSY 278 GY F L R+GG+ SY Sbjct: 266 GYSNAAAVLFSFVVIAFSLLNFYLFREGGLKSY 298 >lin0760 [G] COG1175 ABC-type sugar transport systems, permease components Length = 296 Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 84/244 (34%), Positives = 135/244 (55%), Gaps = 2/244 (0%) Query: 5 LLFLAAFTFWPIIYGIPLSLTDYSVITETHYVGFENFTRAFQDHNFIISLWNSLVY-VLI 63 +L LA F PI + +S TDY ++ +++GF+N+ + F+D F+ISL N+++Y L Sbjct: 25 VLLLAIFMILPIGMALFVSFTDYDIVNSPNWIGFDNYIKMFRDPYFLISLKNTIIYTALF 84 Query: 64 VPVIQVISILMAILVNSRIPGVKMFRTAYYIPVVTSMVAVALIWSWXXXXXXXXXXXXIQ 123 VP+ V S+ AIL+N G +FRT +Y+PV+ S VA A IW W + Sbjct: 85 VPLGLVASLGAAILINMNKKGAGLFRTFFYVPVLCSTVATATIWYWLLNPQYGLINRVLG 144 Query: 124 AGIISGQVSWLSTSTTALYVLMFITMWKXXXXXXXXXXXXXXXVPSDLYEAARVDGANFL 183 I+G +WL S A++ ++ +++W +P++LYEA++++GA+ Sbjct: 145 WFGINGP-AWLYDSNWAMFAIVMMSVWMTFGTNMMIFLAGLQGIPANLYEASKIEGASRW 203 Query: 184 KLIIHVTIPLLRPHILFCTLISVMGAIRVFDEVYILTKGGPGTSTLTSSVYIFQKGLEQF 243 K +VT P L T + ++ A +VFD+ Y+LTKGGPG ST+T YI+ +G Sbjct: 204 KTFRYVTWPSLSRTTFLVTTMLIINAFQVFDQAYVLTKGGPGNSTITLVYYIYNEGFGGL 263 Query: 244 NFGY 247 GY Sbjct: 264 KMGY 267 >alr0738 [G] COG1175 ABC-type sugar transport systems, permease components Length = 359 Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 16/244 (6%), Positives = 40/244 (16%), Gaps = 9/244 (3%) Query: 13 FWPIIYGIPLSLTDYSVITET-HYVGFENFTRAFQDHNFIISLWNSLVY-VLIVPVIQVI 70 L + E R L + +P I Sbjct: 34 KANAYGHGLLETARTLPDADAFGVARLEEALRLRAGGITKPVLLLEGFFDARDLPTISAQ 93 Query: 71 SILMAILVNSRIPGVKMFRTAYYIPVVTSMVAVALIWSWXXXXXXXXXXXXIQAGIISGQ 130 A+ ++ ++ + V + Q + Sbjct: 94 HFHTAVHNEEQLAALEEASLDEPVTVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQP 153 Query: 131 VSWLSTSTT-------ALYVLMFITMWKXXXXXXXXXXXXXXXVPSDLYEAARVDGANFL 183 V+ +S A + I + + Sbjct: 154 VNIVSHFARADEPKCGATEKQLAIFNTFCEGKPGQRSIAASGGILLWPQSHFDWVRPGII 213 Query: 184 KLIIHVTIPLLRPHILFCTLISVMGAIRVFDEVYILTKGGPGTSTLTSSVYIFQKGLEQF 243 + C + + + + + + T S + Sbjct: 214 LYGVSPLEDRSTGADFGCQPVMSLTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMG 273 Query: 244 NFGY 247 Sbjct: 274 YGDG 277 >slr1202 [G] COG1175 ABC-type sugar transport systems, permease components Length = 298 Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 77/250 (30%), Positives = 135/250 (54%), Gaps = 4/250 (1%) Query: 1 MTPGLLFLAAFTFWPIIYGIPLSLTDYSV--ITETHYVGFENFTRAFQDHNFIISLWNSL 58 + P L+ L A F+P + LS T Y + +VG NF R ++D F ++ ++L Sbjct: 20 LLPALVMLGATVFYPALQAFSLSFTQYELDLTKAPAWVGLANFERLWRDRVFWLTFRHTL 79 Query: 59 VYVL-IVPVIQVISILMAILVNSRIPGVKMFRTAYYIPVVTSMVAVALIWSWXXXXXXXX 117 +Y++ +VP++ ++ + +AILVN ++ G+ FR AYY PV+TS+V + W Sbjct: 80 LYLVGVVPLLIMLPLGLAILVNQKLRGITWFRMAYYTPVITSIVVAGIAWKALYASNGIL 139 Query: 118 XXXXIQAGIISGQVSWLSTSTTALYVLMFITMWKXXXXXXXXXXXXXXXVPSDLYEAARV 177 G G + WL++ AL+ +M +T+WK +P +LYEA + Sbjct: 140 NQILALLGFSDG-IPWLTSPNLALWSVMVVTVWKGLGYYMVIYLAGLQAIPQELYEAGAI 198 Query: 178 DGANFLKLIIHVTIPLLRPHILFCTLISVMGAIRVFDEVYILTKGGPGTSTLTSSVYIFQ 237 DGA+ + +TIPL+RP+ ++S + A++VF+EVYI+T+GGP ++ T Y+++ Sbjct: 199 DGADGWRQHWDITIPLMRPYCFLVGVLSSISALKVFEEVYIMTQGGPLNASKTVVYYVYE 258 Query: 238 KGLEQFNFGY 247 + + Y Sbjct: 259 RAFQDLEMNY 268 >lin0218 [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 132/248 (53%), Gaps = 2/248 (0%) Query: 1 MTPGLLFLAAFTFWPIIYGIPLSLTDYSVITETHYVGFENFTRAFQDHNFIISLWNSLVY 60 + P LL F PI+ + +S TD+ +++ H+ GFEN+ R F D F S N++ + Sbjct: 17 LLPNLLGFLIFIAIPILGSLGISFTDWDLVSTIHFTGFENYKRLFNDPEFWKSFRNTITF 76 Query: 61 VL-IVPVIQVISILMAILVNSRIPGVKMFRTAYYIPVVTSMVAVALIWSWXXXXXXXXXX 119 ++ +P + ++ + A+++N +I FR Y++PV+TS VAV+L+W W Sbjct: 77 IIGYLPSVMILGLACALMLNQKIKLRPFFRAVYFLPVITSWVAVSLVWKWLFNPSYGLIN 136 Query: 120 XXIQAGIISGQVSWLSTSTTALYVLMFITMWKXXXXXXXXXXXXXXXVPSDLYEAARVDG 179 + I+G +WL+ TA+ ++ + WK + YEAA +DG Sbjct: 137 YFLSLIGIAGP-NWLTDPQTAMIAVIITSAWKDIGFVMVLFLGGLQNISPSYYEAANMDG 195 Query: 180 ANFLKLIIHVTIPLLRPHILFCTLISVMGAIRVFDEVYILTKGGPGTSTLTSSVYIFQKG 239 A+ L+ + +TIPLL P F T+IS++ + +VFD+V I+T+GGP +T+T I+ Sbjct: 196 ASKLRQLFSITIPLLTPTTFFVTIISLINSFQVFDQVMIMTEGGPSGATMTLVQNIYNHA 255 Query: 240 LEQFNFGY 247 F GY Sbjct: 256 FRYFEMGY 263 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.329 0.142 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,077,641 Number of extensions: 542990 Number of successful extensions: 2035 Number of sequences better than 1.0e-05: 151 Number of HSP's gapped: 1752 Number of HSP's successfully gapped: 152 Length of query: 278 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 173 Effective length of database: 26,268,361 Effective search space: 4544426453 Effective search space used: 4544426453 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)