BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0101.0002.p (442 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value all1027 [G] COG1653 ABC-type sugar transport system, periplasmic... 236 6e-62 TM0810 [G] COG1653 ABC-type sugar transport system, periplasmic ... 232 7e-61 slr1897 [G] COG1653 ABC-type sugar transport system, periplasmic... 196 7e-50 lin1841 [G] COG1653 ABC-type sugar transport system, periplasmic... 112 2e-24 BMEII0542 [G] COG1653 ABC-type sugar transport system, periplasm... 102 9e-22 >all1027 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 432 Score = 236 bits (601), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 140/395 (35%), Positives = 221/395 (55%), Gaps = 26/395 (6%) Query: 58 LEFWTIALQPTFNDYFNDLIAKYEESHPGVTVEWKDYPYDAISQRLLTSTASGKSPDVVN 117 +EFWT+ LQP F +YF LIA +E +PG+ V W D P+ A+ ++LT+ ++ PDVVN Sbjct: 45 IEFWTMQLQPQFTNYFQSLIANFETQNPGIKVNWVDVPWAAMENKILTAVSAKTPPDVVN 104 Query: 118 LNTEFASQLGSKGALLNLTEYLTDEERNSYFEGIYNSTVIDGKAYSLPWYTGTEVLFMNK 177 LN +FASQL + A L+L + E R+SY I+ ++ ++GK++ +PWY T + N Sbjct: 105 LNPDFASQLAGRNAWLDLDTKVPQEARSSYLPNIWKASTLNGKSFGVPWYLTTRLTIYNT 164 Query: 178 KLVEKAGLDPANPPKTREELIEWARQIHKQTGAAGYAQQLVSKLFPIDGISILN------ 231 L+++AG+ + PP T EL + A+QI +TG + V P D +L Sbjct: 165 DLLKQAGI--SKPPATYAELAQAAQQIKDKTGKYAFFVTFV----PQDSGEVLQSFVQMG 218 Query: 232 ----EDKTAAAFNTPEAEAMISQMRDLMKEGVVLKE--DADFKKQIQYFSGQQVAFQLSG 285 + + AAFN+P+ +A DL K+G++ KE + I + + AF SG Sbjct: 219 ATLVDTEGKAAFNSPQGKAAFQYWVDLYKKGLLPKEALTQGHRHAIDLYQSGETAFLASG 278 Query: 286 PTFINFIKTSAPDV-YANTIAVQLP--TGKANLRLSNSMDLVVPQKSKNPEQAVEFAAFV 342 P F+ I T+AP V A+ IA QL TGK N+ + M++VVP+ +K P+ AV+FA FV Sbjct: 279 PEFLKTITTNAPKVAQASAIAPQLTGDTGKKNVAV---MNIVVPRDTKQPDAAVKFALFV 335 Query: 343 TNADNQTAFSKVANTLPSSKASIQDPFFTE--SDGTLEAEAKVVSSQSLDKATDYMVGVP 400 TN +NQ AF+K AN LPS+ ++ D +F + +D + +A+VVS+Q L +A + Sbjct: 336 TNDENQLAFAKAANVLPSTTKALADSYFKDIPADASTVEKARVVSAQQLQQAEILTPALK 395 Query: 401 NASDINSAIARGFQEILLNGADIKQTLDAVEKEVN 435 + + AI Q +L + + ++ +E N Sbjct: 396 DIKKLQKAIYDNLQAAMLGEKTVDKAVEDAAQEWN 430 >TM0810 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 420 Score = 232 bits (592), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 122/390 (31%), Positives = 214/390 (54%), Gaps = 11/390 (2%) Query: 60 FWTIALQPTFNDYFNDLIAKYEESHPGVTVEWKDYPYDAISQRLLTSTASGKSPDVVNLN 119 FWT++L+PTF D+ +I +YEE +P V + W+D P+D + Q+LL + +SG PDVVNLN Sbjct: 25 FWTMSLKPTFTDFIQGIIDRYEELNPDVEIVWEDVPWDVLQQKLLAAFSSGNPPDVVNLN 84 Query: 120 TEFASQLGSKGALLNLTEYLTDEERNSYFEGIYNSTVIDGKAYSLPWYTGTEVLFMNKKL 179 ++ + K L L + L +E N YF+ + Y +PWYT +V+F NK++ Sbjct: 85 AQWTIEFAQKKVLFPLNDLLPEEVINQYFDNMIKGLTWKDGIYGIPWYTAVDVIFYNKEI 144 Query: 180 VEKAGLDPANPPKTREELIEWARQIHKQTGAAGYAQQLV---SKLFPIDGISILNEDKT- 235 EKAGLDP PP+T +E++ ++ I ++TG G + S +F DG+++ D+ Sbjct: 145 FEKAGLDPKYPPRTWDEILLYSVLIKEKTGKYGALPTIFQDPSAIFNWDGLNLYTVDENN 204 Query: 236 ---AAAFNTPEAEAMISQMRDLMKEGVV---LKEDADFKKQIQYFSGQQVAFQLSGPTFI 289 F+ PE +++ L K+ + + + ++ + + + ++A ++G F Sbjct: 205 RIKEVLFDRPEYAHTLNKWATLYKQKYIPSEIVQGGEWTRATELYQAGELAMLITGVQFA 264 Query: 290 NFIKTSAPDVYANTIAVQLPTGKANLRLSNSMD-LVVPQKSKNPEQAVEFAAFVTNADNQ 348 + +K +AP++Y + +P K +R+S L V + SKNP++A +FAAFV N +NQ Sbjct: 265 DRVKWNAPEIYEKSDVAPIPAPKPGVRMSGWYSTLNVVRGSKNPKEAAKFAAFVANLENQ 324 Query: 349 TAFSKVANTLPSSKASIQDPFFTESDGTLEAEAKVVSSQSLDKATDYMVGVPNASDINSA 408 AF K+ P+ KA++ DP+F++ DGTL A+A+++ ++ L+ T Y +P + Sbjct: 325 IAFCKLVTIFPTLKAAVNDPWFSKDDGTLAAKARIMGAKYLENITFYNDDIPFRKEAFDR 384 Query: 409 IARGFQEILLNGADIKQTLDAVEKEVNRII 438 + ++ L D + L K +I Sbjct: 385 LKDAIIQVFLGQKDPETALKETAKYWRYLI 414 >slr1897 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 433 Score = 196 bits (498), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 124/404 (30%), Positives = 212/404 (52%), Gaps = 20/404 (4%) Query: 47 QTDSPQAEPVTLEFWTIALQPTFNDYFNDLIAKYEESHPGVTVEWKDYPYDAISQRLLTS 106 Q++SPQ+ + FWT+ LQP FN YF+DLI+ +E ++P V W D P++A+ ++L++ Sbjct: 30 QSNSPQSMEGKVSFWTMQLQPKFNKYFDDLISTFERNNPPEQVSWVDIPWNAMESKILSA 89 Query: 107 TASGKSPDVVNLNTEFASQLGSKGALLNLTEYLTDEERNSYFEGIYNSTVI-DGKAYSLP 165 ++ +PDVVNLN F+S L SK A LNL E ++ E + Y I+ + + +G+ + P Sbjct: 90 VSANTAPDVVNLNPTFSSLLASKNAWLNLEEEVSAEVKARYLPSIWQANSLGNGEVFGFP 149 Query: 166 WYTGTEVLFMNKKLVEKAGLDPANPPKTREELIEWARQIHKQTGAAGY--------AQQL 217 WY T + N+ L+++AGL + PP T EL AR+I +TG G+ + + Sbjct: 150 WYLTTRITIYNQDLLQQAGL--STPPATFAELAVAAREIKAKTGKYGFFVTFSPSDSAEA 207 Query: 218 VSKLFPIDGISILNEDKTAAAFNTPEAEAMISQMRDLMKEGVVLKE--DADFKKQIQYFS 275 + L + G+ +++ D A FN+P + DL ++G++ E ++ + Sbjct: 208 LESLVQM-GVQLVDSDGR-ATFNSPAGKVAFQYWVDLYQQGLLPPEVLTEGHRRAGDLYQ 265 Query: 276 GQQVAFQLSGPTFINFIKTSAPDVYANTIAVQLPTGKANLRLSNSMDLVVPQKSKNPEQA 335 +AF +GP + ++ +AP + + A G+ R M+LV+P+ +KNP A Sbjct: 266 SGAIAFLSAGPELLASLEKNAPSIAKVSAAAPQIVGETGKRNVAVMNLVIPRSTKNPTGA 325 Query: 336 VEFAAFVTNADNQTAFSKVANTLPSSKASIQDPFFTE----SDGTLEAEAKVVSSQSLDK 391 ++FA FVTN DNQ AF K AN LPS+ ++ D + E S+ + A+ V+ + L Sbjct: 326 IKFAEFVTNTDNQFAFIKEANVLPSTIGAV-DKYRQELAQISNASSLENARRVALEQLPT 384 Query: 392 ATDYMVGVPNASDINSAIARGFQEILLNGADIKQTLDAVEKEVN 435 A + + N + + I ++ + Q L E+ N Sbjct: 385 AEVLIPPMANLNQLKRIIYENLGAAMVGNKTVDQALQDAEQVWN 428 >lin1841 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 414 Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 92/372 (24%), Positives = 162/372 (43%), Gaps = 35/372 (9%) Query: 86 GVTVEWKDYPYDAISQRLLTSTASGKSPDVVNLNTEFASQLGSKGALLNLT---EYLTDE 142 G+ V+ + P+ +LLT+ AS PDVV + T + + GALL++T E + Sbjct: 61 GIEVKVQVIPWANAHDKLLTAVASKSGPDVVQMGTTWMPEFVEAGALLDITKDVEKSKNM 120 Query: 143 ERNSYFEGIYNSTVIDGKAYSLPWYTGTEVLFMNKKLVEKAGLDPANPPKTREELIEWAR 202 + +F G +T DGK Y +PWY T VLF L++K G + A PKT +EL + A Sbjct: 121 NSDLFFPGSVKTTQFDGKTYGVPWYAETRVLFYRTDLLKKVGYNEA--PKTWDELSDAAL 178 Query: 203 QIHK--------------QTGAAGYAQQLVSKLFPIDGISILNEDKTAAAFNTPEAEAMI 248 ++ K QT + +Q S LF DG + N+ P + + Sbjct: 179 KLSKRGKDMYGFAIDPNEQTTGFIFGRQNGSPLFDKDGTPVFNK--------KPFVDT-V 229 Query: 249 SQMRDLMKEGVVLKEDADFKKQIQYFSGQQVAFQLSGPTFINFIKTSAPDVYANTIAVQL 308 + + +K G D + V +SGP +N +K +APD+ L Sbjct: 230 TYLDSFIKNGSAPDTDLGLDASQSFGGDGIVPMFMSGPWMVNTLKDTAPDIDGKWATAVL 289 Query: 309 PTGKANLRLSNSMDLVVPQKSKNPEQAVEFAAFVTNADNQTAFSKVANTLPSSKASIQDP 368 P + N +L + + S + A++F +++ D Q ++ K N++P+ + +D Sbjct: 290 PKKENNESSLGGANLSIFKYSNKKDDALKFMDYMSQPDVQLSWLKDTNSMPARMDAWEDD 349 Query: 369 FFTESDGTLEAEAKVVSSQSLDKATDYMVGVPNASDINSAIARGFQEILLNGADIKQTLD 428 + KV Q K + M +P +I + +++I GAD++ +D Sbjct: 350 MLKN-----DPYYKVFGEQM--KTAEPMPLIPQFEEIAQLYGKSWEQIYRGGADVQTQMD 402 Query: 429 AVEKEVNRIISQ 440 +V ++ + Sbjct: 403 TFNDQVEALLKK 414 >BMEII0542 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 398 Score = 102 bits (255), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 82/305 (26%), Positives = 141/305 (46%), Gaps = 20/305 (6%) Query: 72 YFNDLIAKYEESHPGVTVEWKDYPYDAISQRLLTSTASGKSPDVVNLNTEFASQLGSKGA 131 YF ++ +E +PG+T+ ++ P+D + Q+L T ++G + D+ + T + +G Sbjct: 29 YFEEVKKAFEAENPGITLNFEVVPWDVLLQKLTTDISAGTNADLSIIGTRWLIDFVQQGI 88 Query: 132 LLNLTEYLTDEERNSYFEGIYNSTVIDGKAYSLPWYTGTEVLFMNKKLVEKAGLDPANPP 191 L Y+ DE + + E + +V+DGK Y LP ++ NK L EKAG+ NPP Sbjct: 89 AEPLDGYMNDEFKGRFIETFLSPSVLDGKTYGLPIAASVRAMYYNKDLFEKAGIK--NPP 146 Query: 192 KTREELIEWARQIHKQTGAAGYAQQLVSKLFPID----------GISILNEDKTAAAFNT 241 +EL A +I K G Y L K D G ILN+D T + +T Sbjct: 147 ANWDELKADAAKI-KALGGENYGFGLQGKEIETDVYYYYAMWSYGTEILNKDGT-SGLST 204 Query: 242 PEAEAMISQMRDLMKEGVVLKEDADFKKQ-IQ-YFSGQQVAFQLSGPTFINFIKTSAPDV 299 P A + ++ +G+ + ++ +Q F +V ++ P N IK AP++ Sbjct: 205 PGALEAAKLYKSMIDDGLTQPGVTSYAREDVQNLFKQGKVGMMITAPFLSNQIKEEAPNL 264 Query: 300 YANTIAVQLPTGKANLRLSNSM--DLVVPQKSKNPEQAVEFAAFVTNADNQTAFSKVANT 357 A+ P G R + + +++ Q SKN E+A + F+ D + F++ Sbjct: 265 KYGVAAI--PAGPTGARGTYGVTDSVIMFQNSKNKEEAWKVLDFLFQKDWRAKFTQNEGF 322 Query: 358 LPSSK 362 LP +K Sbjct: 323 LPVNK 327 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.314 0.129 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 29,179,557 Number of extensions: 1177785 Number of successful extensions: 4930 Number of sequences better than 1.0e-05: 66 Number of HSP's gapped: 4913 Number of HSP's successfully gapped: 66 Length of query: 442 Length of database: 38,378,431 Length adjustment: 109 Effective length of query: 333 Effective length of database: 25,807,025 Effective search space: 8593739325 Effective search space used: 8593739325 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 117 (49.7 bits)