BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0100.0020.p
         (116 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_yvbA [K] COG0640 Predicted transcriptional regulators              117   6e-27
BH0945 [K] COG0640 Predicted transcriptional regulators               105   2e-23
CC3028 [K] COG0640 Predicted transcriptional regulators                84   5e-17
SMb21008 [K] COG0640 Predicted transcriptional regulators              67   6e-12
mll2255 [K] COG0640 Predicted transcriptional regulators               66   1e-11

>BS_yvbA [K] COG0640 Predicted transcriptional regulators
          Length = 90

 Score =  117 bits (292), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 67/86 (77%)

Query: 7  MNESFKALADPTRRQILRLLREKDRTAGEIADYFNMSKPSISHHLNALKHAGLVQDERQG 66
          MN  FKA++DPTRR+IL LL+  D TAG+IA++FN+SKPSISHHLN LK A ++ D R+G
Sbjct: 1  MNNVFKAISDPTRRKILDLLKGGDMTAGDIAEHFNISKPSISHHLNILKQAEVISDHRKG 60

Query: 67 QFILYSLDTTVLEEVLGWFLEFTGTG 92
          QFI YSL+TTVL++ + W L F   G
Sbjct: 61 QFIYYSLNTTVLQDSINWMLNFINKG 86


>BH0945 [K] COG0640 Predicted transcriptional regulators
          Length = 99

 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 4/96 (4%)

Query: 11  FKALADPTRRQILRLLREKDRTAGEIADYFNMSKPSISHHLNALKHAGLVQDERQGQFIL 70
           +KALAD  RR+IL LL E D+TAGEIAD F+MSKP+IS HL  LK+A LV  E++GQ++ 
Sbjct: 6   YKALADMNRRKILDLLNEGDKTAGEIADQFDMSKPAISQHLTVLKNAELVHAEKKGQYVY 65

Query: 71  YSLDTTVLEEVLGWFLEFTGTGKERETHGRTESKPK 106
           YSL+T+VL+E++ W + FT    E+E    T  +PK
Sbjct: 66  YSLNTSVLQEMVKWLMRFT----EKEGRQPTGIEPK 97


>CC3028 [K] COG0640 Predicted transcriptional regulators
          Length = 151

 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 54/83 (65%)

Query: 7   MNESFKALADPTRRQILRLLREKDRTAGEIADYFNMSKPSISHHLNALKHAGLVQDERQG 66
           MN  FKALA P RRQI+ +LRE+   +GEIA  F+MS P+++ HL ALK AGLV+ ER G
Sbjct: 54  MNSVFKALAHPARRQIIVMLRERPMPSGEIAAAFDMSWPTVTGHLTALKDAGLVEAERDG 113

Query: 67  QFILYSLDTTVLEEVLGWFLEFT 89
             I Y L  + +EE +   ++  
Sbjct: 114 NSIRYRLQISAIEEAVAVLMDLV 136


>SMb21008 [K] COG0640 Predicted transcriptional regulators
          Length = 110

 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 11 FKALADPTRRQIL-RLLREKDRTAGEIADYFNMSKPSISHHLNALKHAGLVQDERQGQFI 69
          F+ LADPTRR +  RL RE +RT G +     +S+P +S HL  LK AGLV+D  +G+  
Sbjct: 12 FRTLADPTRRALFERLCREGERTVGALTARAGVSQPVVSKHLGILKQAGLVRDRHEGRHT 71

Query: 70 LYSLDTTVLEEVLGWFLEFTGTGKER 95
           YS     L  ++ W  E  G  + R
Sbjct: 72 YYSAQLGALAPLVDWTREMAGFWQSR 97


>mll2255 [K] COG0640 Predicted transcriptional regulators
          Length = 107

 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 11 FKALADPTRRQIL-RLLREKDRTAGEIADYFNMSKPSISHHLNALKHAGLVQDERQGQFI 69
          F+ LADPTRR I  RL R+ ++T G +     +S+P++S HL  LK AGLV+D  +G+  
Sbjct: 9  FRTLADPTRRAIFERLCRQGEQTVGALTSQSGVSQPAVSKHLGVLKQAGLVRDRHEGRQT 68

Query: 70 LYSLDTTVLEEVLGWFLEFTGTGKER 95
           YS     L  ++ W  E  G  + R
Sbjct: 69 HYSAQLGALAPLMDWTREMAGFWEAR 94


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.316    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,573,264
Number of extensions: 333010
Number of successful extensions: 914
Number of sequences better than 1.0e-05: 56
Number of HSP's gapped: 917
Number of HSP's successfully gapped: 56
Length of query: 116
Length of database: 38,378,431
Length adjustment: 83
Effective length of query: 33
Effective length of database: 28,805,709
Effective search space: 950588397
Effective search space used: 950588397
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)