BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0100.0009.p
         (95 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC2671 [J] COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C s...    74   4e-14

>CAC2671 [J] COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit
          Length = 99

 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 63/95 (66%)

Query: 1  MSITVHDVQHVAKLARLHLSPEEEAKLTEQMNAILQYAEKLNELDTENVKPTTHVLQVSN 60
          MS++  DV++VA+LARL  S E++    E +N+IL Y +KL+ELDT+NV    +   + N
Sbjct: 5  MSVSKKDVEYVAELARLSFSEEQKEGFMEDLNSILGYVDKLSELDTDNVDIIVNPYYIEN 64

Query: 61 VMRDDVVKESLSQEEALLNAPEDEDGHFKVPAVLE 95
            R+D V+ES+  ++ + NAP++ + +  VP +++
Sbjct: 65 KFREDEVEESMDLKDVIKNAPKNLEEYIVVPKIID 99


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.309    0.125    0.330 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,589,681
Number of extensions: 191574
Number of successful extensions: 387
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 388
Number of HSP's successfully gapped: 1
Length of query: 95
Length of database: 38,378,431
Length adjustment: 64
Effective length of query: 31
Effective length of database: 30,997,055
Effective search space: 960908705
Effective search space used: 960908705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 109 (46.6 bits)