BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0091.0004.p
         (192 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ywlD [S] COG1971 Predicted membrane protein                         69   3e-12
BH3770 [S] COG1971 Predicted membrane protein                          54   2e-07

>BS_ywlD [S] COG1971 Predicted membrane protein
          Length = 185

 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 54/93 (58%)

Query: 13  GQIVTIAIMAIALGMDAFSLGVGIGMKGIRLLHVLQLSLLIAFFHVLMPLLGLFTGSYVG 72
           G+++T++IMA ALGMDAFS+G+G+GM  +R   +  +  +I  FHV+MPL G+  G+ + 
Sbjct: 7   GELITLSIMAFALGMDAFSVGLGMGMVKLRKKQIFYIGFIIGLFHVIMPLAGMAAGNMLS 66

Query: 73  HLLGQVTTYAAXXXXXXXXXHMVFNSFRADHSR 105
            LLG +  Y            M+  SF+    R
Sbjct: 67  GLLGVLAVYIGGALLFVLGVQMLMASFKQSEER 99


>BH3770 [S] COG1971 Predicted membrane protein
          Length = 181

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%)

Query: 14  QIVTIAIMAIALGMDAFSLGVGIGMKGIRLLHVLQLSLLIAFFHVLMPLLGLFTGSYVGH 73
           +++ + IMA ALGMDAFS+ +G+G  G+R   + ++ L I  FHV+MPL+G+  G  +  
Sbjct: 4   ELIALLIMASALGMDAFSIALGMGTLGLRFSQMFKVGLTIGVFHVIMPLMGMVAGKLLSA 63

Query: 74  LLGQVTTYAAXXXXXXXXXHMVFNSFRADH 103
            LG    +            M+ + F+   
Sbjct: 64  HLGLFANWLGAGLLLWLGLVMIVSPFQEKE 93


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.332    0.144    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,651,053
Number of extensions: 280797
Number of successful extensions: 816
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 817
Number of HSP's successfully gapped: 2
Length of query: 192
Length of database: 38,378,431
Length adjustment: 101
Effective length of query: 91
Effective length of database: 26,729,697
Effective search space: 2432402427
Effective search space used: 2432402427
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 113 (48.1 bits)