BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0088.0010.p (221 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC1657 [S] COG1357 Uncharacterized low-complexity proteins 149 4e-36 BS_yisX [S] COG1357 Uncharacterized low-complexity proteins 139 3e-33 MA0507 [S] COG1357 Uncharacterized low-complexity proteins 57 2e-08 Cgl1395 [S] COG1357 Uncharacterized low-complexity proteins 54 1e-07 YPO0509 [S] COG1357 Uncharacterized low-complexity proteins 50 3e-06 >CAC1657 [S] COG1357 Uncharacterized low-complexity proteins Length = 216 Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 67/173 (38%), Positives = 111/173 (64%) Query: 44 IEYQEADRVSFDKVIFRNVTVTESTLHAIELTDVIFENCDLSNVNFSDAFVHRTEFRNCK 103 +E ++A +VS + IF+NV+ ++ I+LTDVIFE CDLSN +F+++ ++RT+F+NCK Sbjct: 44 LENKQAKKVSISQSIFKNVSFNNTSFKGIDLTDVIFEKCDLSNADFTESVIYRTQFKNCK 103 Query: 104 LIGTDFSRGRFQNVRIVDCIGDFASFRFGKFKGTVFTNCRLVSSDYYQAELTHIGFSECD 163 L+G + S G NV +C+ ++ + K +F C S+D+Y+++ T++ F + Sbjct: 104 LMGINLSEGTLNNVTFDNCMARYSICTLLRCKNVLFKECTFTSTDFYKSQFTNVEFLNSE 163 Query: 164 IDQATFAGCRLKEIDLSDCSFTGLHVDIEDLAGCIISAEQAASFAGLLGLVIK 216 + +A LK IDL+ CS G+ ++IEDL GCI+ EQ FA LLG+++K Sbjct: 164 LIEAQMHETSLKGIDLTSCSIDGIGLNIEDLKGCIVGPEQLMCFANLLGVILK 216 >BS_yisX [S] COG1357 Uncharacterized low-complexity proteins Length = 212 Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 75/209 (35%), Positives = 114/209 (54%), Gaps = 6/209 (2%) Query: 13 KITEENALLPQQIHT------LQSKEEISHCLISDSLIEYQEADRVSFDKVIFRNVTVTE 66 KI + +P+ + T + + IS L D I ++ +R+ +K +FRNV + Sbjct: 3 KIAIQKPNIPENLQTADFHDAVTQDDVISMHLFEDCTICGEDIERLCVEKTVFRNVVFID 62 Query: 67 STLHAIELTDVIFENCDLSNVNFSDAFVHRTEFRNCKLIGTDFSRGRFQNVRIVDCIGDF 126 + IELTDVIFE CDLSN +FS A +HRT + K++G + + +NV +C G F Sbjct: 63 VSFRHIELTDVIFEKCDLSNADFSGAVIHRTSVKQSKMVGMNVAEATLRNVSFEECHGHF 122 Query: 127 ASFRFGKFKGTVFTNCRLVSSDYYQAELTHIGFSECDIDQATFAGCRLKEIDLSDCSFTG 186 +SF + K F +C L+ S+ L F C+++ A+F G L+ +D+S C F Sbjct: 123 SSFSYSNMKQVRFDHCALMQSECSDTVLQQTHFDGCELEGASFTGTSLQNMDISTCRFEQ 182 Query: 187 LHVDIEDLAGCIISAEQAASFAGLLGLVI 215 LHV ++ L GC I+ E A +FA LG VI Sbjct: 183 LHVSLDKLKGCKIAPEHAIAFARALGAVI 211 >MA0507 [S] COG1357 Uncharacterized low-complexity proteins Length = 172 Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 5/174 (2%) Query: 44 IEYQEADRVSFDKVIFRNVTVTESTLHAIELTDVIFENCDLSNVNFSDAFVHRTEFRNCK 103 +EYQ + F+ F++ +T+ + D FENC+LSNV+ + F++CK Sbjct: 1 MEYQNEE---FEAETFKDTDLTDVSFKDSRFIDCDFENCNLSNVDLDNTKFQNIRFKSCK 57 Query: 104 LIGTDFSRGR--FQNVRIVDCIGDFASFRFGKFKGTVFTNCRLVSSDYYQAELTHIGFSE 161 ++G DFS+ D + F + T FTNC++ D+ LT+ F Sbjct: 58 ILGLDFSKCNDFILAFGFEDSFLSLSVFSNMNLENTDFTNCQIYDCDFVNTNLTNANFEN 117 Query: 162 CDIDQATFAGCRLKEIDLSDCSFTGLHVDIEDLAGCIISAEQAASFAGLLGLVI 215 D+ + F L + ++ + L + S + S + +V+ Sbjct: 118 SDLKNSLFKKSNLSFTSFKNAKNYDINPNENFLKKTVFSIPEVISLLDIYDIVL 171 >Cgl1395 [S] COG1357 Uncharacterized low-complexity proteins Length = 222 Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/219 (21%), Positives = 89/219 (40%), Gaps = 19/219 (8%) Query: 1 MEANMSNKIDPPKITE------ENALLPQQIHTLQSKEEISHCLISDSLIEYQEADRVSF 54 M + ++ P+I E +NA PQ I +S E+I C +++ + ++ F Sbjct: 1 MASPRRPQVAAPRIKELRLTGLDNAD-PQDI---ESNEQIESCRFNEAELSERDLSGAGF 56 Query: 55 DKVIFRNVTVTESTLHAIELTDVIFENCDLSNVNFSDAFVHRTEFRNCKLIGTDFSRGRF 114 + F + E+ L + + E + + + + + + + Sbjct: 57 IECEFLGLEAHETELRRAQFVETRIERANAPSFKAARSIWRNATISDSRFGAVEMYEATV 116 Query: 115 QNVRIVDCIGDFASFRFGKFKGTVFTNCRLVSSDYYQAELTHIGFSECDIDQATFAGCRL 174 Q ++I D F + R + +F NC + D QA I F +C + TF L Sbjct: 117 QALKISDSKLSFVNLRGASLRDVLFENCVIDELDLGQARAERIAFKDCTVHSLTFDHAVL 176 Query: 175 KEIDLSDCSFTGLHVD----IEDLAGCIISAEQAASFAG 209 +DL GL ++ +E ++G +IS+ QAA +G Sbjct: 177 SNVDL-----RGLDIERISGVESMSGTVISSLQAADLSG 210 >YPO0509 [S] COG1357 Uncharacterized low-complexity proteins Length = 540 Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 10/146 (6%) Query: 61 NVTVTESTLHAIELTDVIFENCDLSNVNFSDAFVHRTEFRNCKLIGTDFSRGRFQNVRIV 120 NVT + + L + F C + +F A F +C+ +DF R+ NV + Sbjct: 226 NVTFLGTDFSGMTLDNKQFRYCMFTGCHFDKATFKDCTFEHCQFTQSDFENSRWNNVHLS 285 Query: 121 DCIGDFASFRFGKFKGTVFTNCRLVSSDYYQAELTHIGFSE-----CDIDQATFAGCRLK 175 C+ F+ +++ FT+C+ S + H F++ C I+ + F+ Sbjct: 286 GCL-----FKQAEWQKAAFTHCKWEKSTFEYGVFKHAQFTDNALDNCLINHSDFSLGTFD 340 Query: 176 EIDLSDCSFTGLHVDIEDLAGCIISA 201 L+ C F+ H D II++ Sbjct: 341 HCTLNGCFFSETHCDQTQFNQVIITS 366 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.323 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 14,974,429 Number of extensions: 533179 Number of successful extensions: 1309 Number of sequences better than 1.0e-05: 6 Number of HSP's gapped: 1273 Number of HSP's successfully gapped: 6 Length of query: 221 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 119 Effective length of database: 26,614,363 Effective search space: 3167109197 Effective search space used: 3167109197 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 114 (48.5 bits)