BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0088.0009.p
         (97 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2318 [K] COG1522 Transcriptional regulators                         58   4e-09
BS_lrpA [K] COG1522 Transcriptional regulators                         54   8e-08
BH0212 [K] COG1522 Transcriptional regulators                          53   1e-07
BS_lrpB [K] COG1522 Transcriptional regulators                         51   4e-07
CAC1467 [K] COG1522 Transcriptional regulators                         51   4e-07

>RSc2318 [K] COG1522 Transcriptional regulators
          Length = 151

 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 4/97 (4%)

Query: 1   MRELE---IIEGYTVRWNPQKLGQNIHALITVFLSSNKAHPLFQKFALEHGSVAELHRVS 57
           +R LE   +IEGY+ R NP+  G++I ALI +  +  +     + FA     + E HR++
Sbjct: 45  IRRLEEQGVIEGYSARINPELAGRDISALIRIQTTHAQITKCLKAFA-TMPEIIEAHRIT 103

Query: 58  GEGCYWMRVYAKDHDELATFLDQLLEFGNYRVNLGMG 94
           G+ C+ +R   +   +L T +D L  FG    ++ + 
Sbjct: 104 GDDCFIVRAVVQRMKQLETVVDALARFGPVTTSIVLA 140


>BS_lrpA [K] COG1522 Transcriptional regulators
          Length = 136

 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%)

Query: 6   IIEGYTVRWNPQKLGQNIHALITVFLSSNKAHPLFQKFALEHGSVAELHRVSGEGCYWMR 65
           II+G ++  N  KLG +IHA + +++      P       +   V   ++VSG+GCY + 
Sbjct: 47  IIKGCSIEVNQVKLGFSIHAFLNIYIEKIHHQPYLAFIETQDNYVINNYKVSGDGCYLLE 106

Query: 66  VYAKDHDELATFLDQLLEFGNYRVNLGMGQ 95
                ++ L  FL+ L +  NY+V++ +G+
Sbjct: 107 CKFPSNEVLDQFLNDLNKHANYKVSIVIGK 136


>BH0212 [K] COG1522 Transcriptional regulators
          Length = 146

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 7/94 (7%)

Query: 1   MRELEIIEGYTVRWNPQKLGQNIHALITVFLSSNK---AHPLFQKFALEHGSVAELHRVS 57
           ++E  +IEG + R +  K+G+++    TVF+  ++    +  F+KF  E+  + E HR++
Sbjct: 41  LKERGVIEGISARLSYPKIGKSV----TVFIQVSEVTVPYATFEKFVEENPHIIECHRIT 96

Query: 58  GEGCYWMRVYAKDHDELATFLDQLLEFGNYRVNL 91
           G   Y M+   +D   L + +D+L+ +G    +L
Sbjct: 97  GSISYMMKAVVRDMQHLQSLIDELVPYGTLNTSL 130


>BS_lrpB [K] COG1522 Transcriptional regulators
          Length = 149

 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 54/97 (55%), Gaps = 1/97 (1%)

Query: 1   MRELEIIEGYTVRWNPQKLGQNIHALITVFLSSNKAHPLFQKFALEHGSVAELHRVSGEG 60
           M +  II+ Y++  +  K+G +  A +  F+++   H    KF      ++E HRVSG+ 
Sbjct: 43  MEDNGIIKAYSIVVDELKMGFSFTAFVFFFMNA-YMHDDLLKFIATRNEISEAHRVSGDA 101

Query: 61  CYWMRVYAKDHDELATFLDQLLEFGNYRVNLGMGQLK 97
           CY ++V     + L   L+ LL++GNY++ L + ++K
Sbjct: 102 CYLLKVTVHSQEVLNHLLNDLLKYGNYQLYLSIKEVK 138


>CAC1467 [K] COG1522 Transcriptional regulators
          Length = 149

 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 5   EIIEGYTVRWNPQKLGQNIHALITVFLSSNKAHPLFQKFALEHGSVAELHRVSGEGCYWM 64
           EIIEGYT++ N +KLG  I  ++ V +  N  +  F+ F  E+      +R++G+GC+ +
Sbjct: 47  EIIEGYTIKINKKKLGLPIDCIVKVTM-KNGQYEKFKIFIKEYKRSEWCYRIAGDGCFLV 105

Query: 65  RVYAKDHDELATFLDQLLEFGNYRVNLGMGQL 96
           ++  +  +E+  F++ +  +      + + ++
Sbjct: 106 KLLVQSLNEIEEFINDVSSYAVTETIIALSEV 137


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.323    0.139    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 7,455,879
Number of extensions: 264613
Number of successful extensions: 444
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 451
Number of HSP's successfully gapped: 5
Length of query: 97
Length of database: 38,378,431
Length adjustment: 66
Effective length of query: 31
Effective length of database: 30,766,387
Effective search space: 953757997
Effective search space used: 953757997
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)