BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0088.0003.p (253 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value alr2539 [E] COG0411 ABC-type branched-chain amino acid transport... 280 2e-75 DR2119 [E] COG0411 ABC-type branched-chain amino acid transport ... 259 3e-69 DR1035 [E] COG0411 ABC-type branched-chain amino acid transport ... 243 2e-64 PA1071 [E] COG0411 ABC-type branched-chain amino acid transport ... 242 4e-64 RSc2438 [E] COG0411 ABC-type branched-chain amino acid transport... 238 6e-63 >alr2539 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Length = 359 Score = 280 bits (715), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 17/252 (6%), Positives = 45/252 (17%) Query: 1 VLLEVKEASRSFGGLKALSEVSLYIGKGELIGLIGPNGAGKTTLFNLLTGVYPPSTGSII 60 + + A + + + K G A + + Sbjct: 8 INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADAFGVARLEEALRLR 67 Query: 61 LNNESIGGMKPYKINHKGAARTFQNIRLFTSMTVLENVKIAFHQHARHSLFTSMLRLPKH 120 + + T T++ E + + M Sbjct: 68 AGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWMKLDTGM 127 Query: 121 FKGEDEITQKAMDILKIFNLAGQCGEVASNLSYGNQRRLEIARALAAGPKLLLLDEPAAG 180 + Q ++ V + + E G Sbjct: 128 HRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFCEGKPG 187 Query: 181 MNPNETRDLMNLIAWIRKEFDLTILLIEHDMSLVMGVCDRIYVLDRGMLIANGTPSEIRS 240 + L ++ +++ L + M + + + Sbjct: 188 QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSLIAVREH 247 Query: 241 NPKVIEAYLGQE 252 Y G Sbjct: 248 KAGEPVGYGGTW 259 >DR2119 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Length = 259 Score = 259 bits (662), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 124/251 (49%), Positives = 179/251 (71%), Gaps = 2/251 (0%) Query: 2 LLEVKEASRSFGGLKALSEVSLYIGKGELIGLIGPNGAGKTTLFNLLTGVYPPSTGSIIL 61 +L+ + +R FGGL A+++VS + +GE+ GLIGPNGAGKTTLFNL+TG+ PPS+G++ Sbjct: 11 ILQARNMTRRFGGLVAVNDVSFDVREGEIFGLIGPNGAGKTTLFNLMTGLTPPSSGTLTS 70 Query: 62 NNESIGGMKPYKINHKGAARTFQNIRLFTSMTVLENVKIAFHQHARHSLFTSMLRLPKHF 121 +++ G+ P+++ G +RTFQNIRLF ++ LENVK+A H+ L+ + + Sbjct: 71 RGQTVTGLSPHRVAGLGISRTFQNIRLFRGLSALENVKVATHRQTHAGLWQGIFGADR-- 128 Query: 122 KGEDEITQKAMDILKIFNLAGQCGEVASNLSYGNQRRLEIARALAAGPKLLLLDEPAAGM 181 E ++ ++A ++L + L+ + GE+A+N SYG+QR+LEIARALA P++LLLDEPAAGM Sbjct: 129 AEERQVERRAWELLDLVGLSDRAGELAANFSYGDQRKLEIARALATEPRILLLDEPAAGM 188 Query: 182 NPNETRDLMNLIAWIRKEFDLTILLIEHDMSLVMGVCDRIYVLDRGMLIANGTPSEIRSN 241 N E L I +R FDLT+LLIEH + LVMG+CDR+ VL+ G LIA G P+ ++ + Sbjct: 189 NTAEKGQLTAFIREVRDRFDLTVLLIEHHVPLVMGLCDRVAVLNFGELIAIGDPASVQRD 248 Query: 242 PKVIEAYLGQE 252 PKVIEAYLG E Sbjct: 249 PKVIEAYLGGE 259 >DR1035 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Length = 279 Score = 243 bits (620), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 124/252 (49%), Positives = 170/252 (67%) Query: 2 LLEVKEASRSFGGLKALSEVSLYIGKGELIGLIGPNGAGKTTLFNLLTGVYPPSTGSIIL 61 LL+V+ ++SFGGL A+++V+ + + +I +IGPNGAGKTT FNL+TG+Y P G++ L Sbjct: 18 LLDVQHLTKSFGGLTAVNDVTFQVPERRIISVIGPNGAGKTTFFNLITGIYAPDRGTVNL 77 Query: 62 NNESIGGMKPYKINHKGAARTFQNIRLFTSMTVLENVKIAFHQHARHSLFTSMLRLPKHF 121 S+ G++P ++ G +RTFQNIRLF SMT EN+ + R + S+L + Sbjct: 78 AGRSLVGLRPDQVVEAGISRTFQNIRLFPSMTAEENIMLGRGVRLRGGFWDSVLHTARFQ 137 Query: 122 KGEDEITQKAMDILKIFNLAGQCGEVASNLSYGNQRRLEIARALAAGPKLLLLDEPAAGM 181 K E+E A +L L+ GE+++NL YG+QR+LEIARALA PKL+LLDEPAAGM Sbjct: 138 KDEEEARNTARLMLDFVGLSKWRGELSTNLPYGDQRKLEIARALATTPKLILLDEPAAGM 197 Query: 182 NPNETRDLMNLIAWIRKEFDLTILLIEHDMSLVMGVCDRIYVLDRGMLIANGTPSEIRSN 241 NP ET DL LI IR E +T++LIEHDM LVM + + I VL+ G +A G P EIR+N Sbjct: 198 NPRETEDLKALIRAIRDELGVTVVLIEHDMRLVMTLSENITVLNYGSKLAEGLPHEIRNN 257 Query: 242 PKVIEAYLGQEA 253 P+V+ AYLG A Sbjct: 258 PEVMTAYLGSGA 269 >PA1071 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Length = 255 Score = 242 bits (618), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 120/250 (48%), Positives = 166/250 (66%) Query: 2 LLEVKEASRSFGGLKALSEVSLYIGKGELIGLIGPNGAGKTTLFNLLTGVYPPSTGSIIL 61 +LEV + FGGL A++ V+L + + +++ +IGPNGAGKTT+FN LTG Y P+ G I L Sbjct: 5 ILEVSGLTMRFGGLLAVNGVNLKVEEKQVVSMIGPNGAGKTTVFNCLTGFYQPTGGLIRL 64 Query: 62 NNESIGGMKPYKINHKGAARTFQNIRLFTSMTVLENVKIAFHQHARHSLFTSMLRLPKHF 121 + E I G+ +KI KG RTFQN+RLF MT +EN+ +A H+H + + + P Sbjct: 65 DGEEIQGLPGHKIARKGVVRTFQNVRLFKEMTAVENLLVAQHRHLNTNFLAGLFKTPAFR 124 Query: 122 KGEDEITQKAMDILKIFNLAGQCGEVASNLSYGNQRRLEIARALAAGPKLLLLDEPAAGM 181 + E E + A L+ NL A L+YG QRRLEIAR + P++L+LDEPAAG+ Sbjct: 125 RSEREAMEYAAHWLEEVNLTEFANRSAGTLAYGQQRRLEIARCMMTRPRILMLDEPAAGL 184 Query: 182 NPNETRDLMNLIAWIRKEFDLTILLIEHDMSLVMGVCDRIYVLDRGMLIANGTPSEIRSN 241 NP ET DL LIA +R E ++T+LLIEHDM LVM + D I V+++G +A+GTP +IR N Sbjct: 185 NPKETDDLKALIAKLRSEHNVTVLLIEHDMKLVMSISDHIVVINQGAPLADGTPEQIRDN 244 Query: 242 PKVIEAYLGQ 251 P VI+AYLG+ Sbjct: 245 PDVIKAYLGE 254 >RSc2438 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Length = 257 Score = 238 bits (608), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 127/252 (50%), Positives = 161/252 (63%), Gaps = 1/252 (0%) Query: 2 LLEVKEASRSFGGLKALSEVSLYIGKGELIGLIGPNGAGKTTLFNLLTGVYPPSTGSIIL 61 LL ++ ++ FGGL+ALS+VSL I +GE+ GLIGPNGAGKTT FN++TG+Y P G +L Sbjct: 6 LLSIRGVNKRFGGLQALSDVSLEIREGEIYGLIGPNGAGKTTFFNVITGLYTPDAGEFVL 65 Query: 62 NNESIGGMKPYKINHKGAARTFQNIRLFTSMTVLENVKIAFHQHARHSLFTSMLRLPKHF 121 + +++ G ARTFQNIRLF MT ENV + H + L ++ R Sbjct: 66 AGQPYQPTAVHEVAKAGIARTFQNIRLFGDMTAAENVMVGRHVRTKAGLIGAVFRTKAAR 125 Query: 122 KGEDEITQKAMDILKIFNLAGQCGEVASNLSYGNQRRLEIARALAAGPKLLLLDEPAAGM 181 + E I A D+L + A NLSYG+QRRLEIARALA PKLL LDEPAAGM Sbjct: 126 EEEASIEDWAHDLLDYVGIGKYANYTARNLSYGHQRRLEIARALATQPKLLALDEPAAGM 185 Query: 182 NPNETRDLMNLIAWIRKEFDLTILLIEHDMSLVMGVCDRIYVLDRGMLIANGTPSEIRSN 241 N E +L L+ IR + TILLIEHD+ LVMG+C+R+ VLD G +IA G P E++SN Sbjct: 186 NATEKVELRGLLDKIRSDGK-TILLIEHDVKLVMGLCNRLTVLDYGKVIAQGLPHEVQSN 244 Query: 242 PKVIEAYLGQEA 253 VIEAYLG A Sbjct: 245 QAVIEAYLGASA 256 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.138 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,080,096 Number of extensions: 725720 Number of successful extensions: 18511 Number of sequences better than 1.0e-05: 2057 Number of HSP's gapped: 15740 Number of HSP's successfully gapped: 2316 Length of query: 253 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 149 Effective length of database: 26,383,695 Effective search space: 3931170555 Effective search space used: 3931170555 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 114 (48.5 bits)