BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0087.0010.p (423 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0574 [P] COG2059 Chromate transport protein ChrA 419 e-117 RSp0555 [P] COG2059 Chromate transport protein ChrA 61 3e-09 FN0713 [P] COG2059 Chromate transport protein ChrA 52 2e-06 FN0712 [P] COG2059 Chromate transport protein ChrA 52 3e-06 BS_ywrB [P] COG2059 Chromate transport protein ChrA 50 7e-06 >BH0574 [P] COG2059 Chromate transport protein ChrA Length = 397 Score = 419 bits (1078), Expect = e-117, Method: Compositional matrix adjust. Identities = 220/386 (56%), Positives = 262/386 (67%), Gaps = 2/386 (0%) Query: 40 LLEVLGVSLKLGLTSFGGPIAHLGYFHNEYIRRRKWMDERSYADLVALCQFLPGPASSQV 99 LLE+L VS +LGLTSFGGPIAHLGYFH EY+RRRKW+DE+SYADLVALCQFLPGPASSQV Sbjct: 12 LLEILIVSTRLGLTSFGGPIAHLGYFHEEYVRRRKWLDEKSYADLVALCQFLPGPASSQV 71 Query: 100 GIGIGVVRAGLLGGFIAWLGFTLPSVIALAVFALVLQGVDIAGAGWIHGLKXXXXXXXXX 159 GIGIGV+RAG+LGG +++LGFTLPSVIAL VFAL+L AGWIH LK Sbjct: 72 GIGIGVMRAGVLGGVVSFLGFTLPSVIALIVFALLLLTFGFQDAGWIHSLKIVAVVVVAH 131 Query: 160 XXLGMGQKLTPDRGRVTIAVIAAVFALSWHXXXXXXXXXXXXGVIGLWLYRGQP--DRGP 217 LGM + LTPD R TIA+ A + L W G +G L+R + ++ Sbjct: 132 AILGMAKNLTPDVKRKTIALFAVILTLLWQTAFTQVGVILIAGFVGYLLFRNETIDEKLE 191 Query: 218 DLPIRISRTVAVSCXXXXXXXXXXXXXXRTSAGAGEFALFDSFYRSGSLVFGGGXXXXXX 277 IS A C R A+FDSFYR+G+LVFGGG Sbjct: 192 HSSFPISHRFAAVCLTLFFGLLIALPLLREVTNQSWIAMFDSFYRAGALVFGGGHVVLPL 251 Query: 278 XXXXXXXAGWVSREDFLAGYGAAQAVPGPLFTFASYLGMMAAGFKGGIIATLGIFLPAFL 337 GW+S +FLAGYGAAQAVPGPLFTFA+Y+G + G++GG+IAT+ IFLPAFL Sbjct: 252 LEREFVPTGWLSEAEFLAGYGAAQAVPGPLFTFAAYIGAVIDGWQGGLIATVAIFLPAFL 311 Query: 338 LVIGALPFWNGLRSSPNVQGALAGINAAVVGILLAALYDPLWTSAILKPLDFALAAILFV 397 L++G LPFWN LR +P V+GAL G+NAAVVGIL+AALY P+WTS+IL DFA AA+LF Sbjct: 312 LILGTLPFWNSLRRNPKVKGALMGVNAAVVGILIAALYHPIWTSSILSATDFAFAALLFA 371 Query: 398 MLFFWKLPPWVIVLAGAAGGMLIQLI 423 ML FWKLPPWVIVL GA GG L+ L+ Sbjct: 372 MLVFWKLPPWVIVLTGAIGGYLLSLL 397 >RSp0555 [P] COG2059 Chromate transport protein ChrA Length = 401 Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 44/76 (57%) Query: 49 KLGLTSFGGPIAHLGYFHNEYIRRRKWMDERSYADLVALCQFLPGPASSQVGIGIGVVRA 108 +LG FGGP+A GY + + R+W+ E Y + +AL Q PGP ++Q+ I +G V Sbjct: 32 RLGSLGFGGPVALAGYMRRDLVEARQWISEADYKEGLALAQLAPGPLAAQLAIYLGYVHY 91 Query: 109 GLLGGFIAWLGFTLPS 124 +LG + + F LPS Sbjct: 92 RILGATLVGIAFVLPS 107 Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 1/152 (0%) Query: 260 FYRSGSLVFGGGXXXXXXXXXXXXXA-GWVSREDFLAGYGAAQAVPGPLFTFASYLGMMA 318 F ++G+ VFG G W++ + F+ A PGP+ ++G + Sbjct: 234 FAKAGAFVFGSGLAIVPFLYGGVVTEFHWLNDKQFVDAVAVAMITPGPVVITVGFIGYLV 293 Query: 319 AGFKGGIIATLGIFLPAFLLVIGALPFWNGLRSSPNVQGALAGINAAVVGILLAALYDPL 378 AG G +A +G FLP +L I P++ P + + G+ AA VG + A+ Sbjct: 294 AGLPGACVAAVGTFLPCYLFTILPAPYFRKYGKLPAILAFVDGVTAAAVGAITGAVIVLA 353 Query: 379 WTSAILKPLDFALAAILFVMLFFWKLPPWVIV 410 S + P A + ++L F KLP VIV Sbjct: 354 RRSIVDVPSVLLALASVALLLRFKKLPEPVIV 385 >FN0713 [P] COG2059 Chromate transport protein ChrA Length = 176 Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 41/83 (49%) Query: 41 LEVLGVSLKLGLTSFGGPIAHLGYFHNEYIRRRKWMDERSYADLVALCQFLPGPASSQVG 100 ++ V K+GL SFGG A L +E + KW+ + + D+VA+ Q PGP S + Sbjct: 4 FDLFFVFFKVGLFSFGGGYAILPLMQHEVVDVNKWISFKDFMDIVAISQITPGPISINLA 63 Query: 101 IGIGVVRAGLLGGFIAWLGFTLP 123 +G G LG IA LP Sbjct: 64 THVGYRIGGTLGSTIATTSVVLP 86 >FN0712 [P] COG2059 Chromate transport protein ChrA Length = 186 Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 44/85 (51%) Query: 40 LLEVLGVSLKLGLTSFGGPIAHLGYFHNEYIRRRKWMDERSYADLVALCQFLPGPASSQV 99 ++E+ + K+G + GG A L +E + ++KW+D + D +A+ Q PG + + Sbjct: 6 IIEIFILFFKIGAFTIGGGYAMLSLIEDEIVNKKKWLDHEEFLDGMAIAQSTPGVLAVNI 65 Query: 100 GIGIGVVRAGLLGGFIAWLGFTLPS 124 + G AG +G F LG LPS Sbjct: 66 SLITGYKIAGFMGMFAGMLGAVLPS 90 Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 3/159 (1%) Query: 256 LFDSFYRSGSLVFGGGXXXXXXXX-XXXXXAGWVSREDFLAGYGAAQAVPGPLFTFASYL 314 +F F++ G+ GGG W+ E+FL G AQ+ PG L S + Sbjct: 9 IFILFFKIGAFTIGGGYAMLSLIEDEIVNKKKWLDHEEFLDGMAIAQSTPGVLAVNISLI 68 Query: 315 -GMMAAGFKGGIIATLGIFLPAFLLVIGALPFWNGLRSSPNVQGALAGINAAVVGILLAA 373 G AGF G LG LP+F +V+ + P V G+ A+ ++L + Sbjct: 69 TGYKIAGFMGMFAGMLGAVLPSFFIVLFLSQILLAYGNHPLVVAIFNGVKPAITALILIS 128 Query: 374 LYDPLWTSAILKPLDFALAAILFVMLFFWKLPPWVIVLA 412 +Y + SA + +F + I+ +++ ++ + P ++++A Sbjct: 129 VYR-IGKSANINRYNFLIPLIVAILIRYFGVSPIIVIIA 166 >BS_ywrB [P] COG2059 Chromate transport protein ChrA Length = 197 Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 22/81 (27%), Positives = 46/81 (56%) Query: 48 LKLGLTSFGGPIAHLGYFHNEYIRRRKWMDERSYADLVALCQFLPGPASSQVGIGIGVVR 107 ++ G+ FGG + + +E + + KW+D+ + +++A+ LPGP ++++ +G Sbjct: 14 VRTGILGFGGGPSVIPLIRHEAVNKYKWIDDDEFGEILAIANALPGPIATKMAAYLGFKL 73 Query: 108 AGLLGGFIAWLGFTLPSVIAL 128 G LG +A L LP+ +A+ Sbjct: 74 KGTLGAIVAILAHILPTCLAM 94 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.326 0.144 0.453 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 28,781,626 Number of extensions: 1145303 Number of successful extensions: 3260 Number of sequences better than 1.0e-05: 11 Number of HSP's gapped: 3252 Number of HSP's successfully gapped: 18 Length of query: 423 Length of database: 38,378,431 Length adjustment: 109 Effective length of query: 314 Effective length of database: 25,807,025 Effective search space: 8103405850 Effective search space used: 8103405850 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 117 (49.7 bits)