BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0087.0006.p
         (105 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MA0853 [V] COG1131 ABC-type multidrug transport system, ATPase c...   118   3e-27
CAC0138 [V] COG1131 ABC-type multidrug transport system, ATPase ...    86   1e-17
STM1028 [R] COG3772 Phage-related lysozyme (muraminidase)              86   2e-17
TM1028 [V] COG1131 ABC-type multidrug transport system, ATPase c...    86   2e-17
BH0818 [V] COG1131 ABC-type multidrug transport system, ATPase c...    84   4e-17

>MA0853 [V] COG1131 ABC-type multidrug transport system, ATPase component
          Length = 314

 Score =  118 bits (295), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 70/85 (82%)

Query: 1   LTKHFGSNHAVNGLSLEVNQGEIYGFLGLNGAGKTTTIRMLLGMIRPDLGSSYVFGERVD 60
           L+K FG  HAVN +SL V +GEIYGFLGL+GAGKTTTIRMLLGMI+P  G++Y+ G+ V+
Sbjct: 17  LSKDFGDLHAVNSISLCVGKGEIYGFLGLSGAGKTTTIRMLLGMIKPTSGAAYLNGKLVN 76

Query: 61  ADSHKLWASVGYMVETPYSYPELTV 85
           A   +LW +VGY+VE PYSYP+LTV
Sbjct: 77  AGETELWKNVGYLVELPYSYPDLTV 101


>CAC0138 [V] COG1131 ABC-type multidrug transport system, ATPase component
          Length = 312

 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 55/84 (65%)

Query: 1  LTKHFGSNHAVNGLSLEVNQGEIYGFLGLNGAGKTTTIRMLLGMIRPDLGSSYVFGERVD 60
          + KH G    + G+S  V +G+I+GFLG NGAGKTTTIRML+G+I+P+ GS  + G  + 
Sbjct: 10 VKKHIGKREIIKGISFSVEEGQIFGFLGPNGAGKTTTIRMLVGLIKPNSGSIKIMGHDIQ 69

Query: 61 ADSHKLWASVGYMVETPYSYPELT 84
           +  K  ++VG +VE P  Y  LT
Sbjct: 70 KEKEKALSNVGCIVENPDMYGFLT 93


>STM1028 [R] COG3772 Phage-related lysozyme (muraminidase)
          Length = 150

 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 6/85 (7%), Positives = 20/85 (23%)

Query: 1  LTKHFGSNHAVNGLSLEVNQGEIYGFLGLNGAGKTTTIRMLLGMIRPDLGSSYVFGERVD 60
          +T              +   G     +G           +  GM+  +  +  +    + 
Sbjct: 9  ITLIKEFEGCSLTAYPDPGTGGDPWTIGYGWTHSVDGKPVKPGMMIDEATAERLLNTGLV 68

Query: 61 ADSHKLWASVGYMVETPYSYPELTV 85
             + +   V   +        ++ 
Sbjct: 69 GYENDVSRLVKVKLTQGQFDALVSF 93


>TM1028 [V] COG1131 ABC-type multidrug transport system, ATPase component
          Length = 293

 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 60/85 (70%)

Query: 1  LTKHFGSNHAVNGLSLEVNQGEIYGFLGLNGAGKTTTIRMLLGMIRPDLGSSYVFGERVD 60
          LTK++G +  V G++  V +GEI+GF+G NGAGKTTTIR+LLG+I PD G + +FG+ V 
Sbjct: 9  LTKYYGKSRGVEGVTFSVEEGEIFGFIGPNGAGKTTTIRLLLGLIFPDSGLAEIFGKDVL 68

Query: 61 ADSHKLWASVGYMVETPYSYPELTV 85
           +  ++  +VGY+      YPE+TV
Sbjct: 69 KEGKEIRKNVGYIPGEVSFYPEVTV 93


>BH0818 [V] COG1131 ABC-type multidrug transport system, ATPase component
          Length = 314

 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 57/84 (67%)

Query: 1  LTKHFGSNHAVNGLSLEVNQGEIYGFLGLNGAGKTTTIRMLLGMIRPDLGSSYVFGERVD 60
          LTK F     ++ L+L VN+GEIYGFLG NGAGKTT ++ML+  ++P  G   +FG+R+ 
Sbjct: 10 LTKTFQGKEIISNLNLHVNKGEIYGFLGPNGAGKTTVMKMLMNFVKPSAGEIELFGQRLT 69

Query: 61 ADSHKLWASVGYMVETPYSYPELT 84
          + S+++   +G M+E P  Y +L+
Sbjct: 70 SQSYEMLKRIGSMIEFPIFYEKLS 93


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 7,347,156
Number of extensions: 266299
Number of successful extensions: 3239
Number of sequences better than 1.0e-05: 475
Number of HSP's gapped: 3261
Number of HSP's successfully gapped: 484
Length of query: 105
Length of database: 38,378,431
Length adjustment: 73
Effective length of query: 32
Effective length of database: 29,959,049
Effective search space: 958689568
Effective search space used: 958689568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)