BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0085.0002.p (280 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_glnM [E] COG0765 ABC-type amino acid transport system, permea... 295 6e-80 Cj0920c [E] COG0765 ABC-type amino acid transport system, permea... 164 2e-40 lin2352_2 [E] COG0765 ABC-type amino acid transport system, perm... 157 2e-38 SA1675_2 [E] COG0765 ABC-type amino acid transport system, perme... 156 3e-38 Cj0940c [E] COG0765 ABC-type amino acid transport system, permea... 150 2e-36 >BS_glnM [E] COG0765 ABC-type amino acid transport system, permease component Length = 216 Score = 295 bits (755), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 143/216 (66%), Positives = 173/216 (80%) Query: 65 MEFSILTDHFGQYLEGFRGTVLSSVLALIGSFIIGTVIAVFRITPVKPLRWFGTGYVEFI 124 M SIL D+F Y++GF T+L+SV+AL GSF++G +AV RIT KPL+W GT YVEFI Sbjct: 1 MNVSILFDNFSMYMDGFYHTLLASVIALAGSFVLGVAVAVMRITVFKPLQWLGTAYVEFI 60 Query: 125 RNIPLLLVVYVFFYGPSALGFTLDGFKAGTIGLTVYTSAFIAEAIRAGIVAVPKGQMEAA 184 RNIPLLL+ +VF++G G LDGF+AGT+ LT+YTSAFIAEAIRAGI +V KGQMEAA Sbjct: 61 RNIPLLLITFVFYFGLPNAGLRLDGFQAGTVALTIYTSAFIAEAIRAGIQSVSKGQMEAA 120 Query: 185 RSSGLSYMQTMTHVILPQAIKLVIPPLGNQFINLIKNSSVLTLVAGLDLMYFADGISTET 244 RSSG +Y Q M H+ILPQAIK+VIPPLGNQF+NL+KNSS+L +VAGLDLMY AD +S+ T Sbjct: 121 RSSGFTYSQAMLHIILPQAIKIVIPPLGNQFLNLVKNSSILGVVAGLDLMYQADLVSSST 180 Query: 245 YRTFDTYIFVALFYLVLTLPLSYGVRVWERRLHRKY 280 FD YIFVALFYLVLT+PLS GV E+RL + Y Sbjct: 181 LVVFDVYIFVALFYLVLTIPLSIGVNYLEKRLEKSY 216 >Cj0920c [E] COG0765 ABC-type amino acid transport system, permease component Length = 250 Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 79/209 (37%), Positives = 132/209 (63%) Query: 72 DHFGQYLEGFRGTVLSSVLALIGSFIIGTVIAVFRITPVKPLRWFGTGYVEFIRNIPLLL 131 D+ ++ GF T+ S+LAL+ + I GT+ V + K +R + YVE +N+PL++ Sbjct: 39 DNKDAFINGFIYTLEVSILALLIATIFGTIGGVMATSRFKIIRAYTRIYVELFQNVPLVI 98 Query: 132 VVYVFFYGPSALGFTLDGFKAGTIGLTVYTSAFIAEAIRAGIVAVPKGQMEAARSSGLSY 191 ++ FY LG LD F G +G+ Y A+++E +R+GI+AVP+GQ EA+ S G +Y Sbjct: 99 QIFFLFYALPVLGIRLDIFTIGVLGVGAYHGAYVSEVVRSGILAVPRGQFEASASQGFTY 158 Query: 192 MQTMTHVILPQAIKLVIPPLGNQFINLIKNSSVLTLVAGLDLMYFADGISTETYRTFDTY 251 +Q M ++I+PQ I++++PP+ NQ +NLIKN+SVL +V G +LM+ AD + + Y Sbjct: 159 IQQMRYIIVPQTIRIILPPMTNQMVNLIKNTSVLLIVGGAELMHSADSYAADYGNYAPAY 218 Query: 252 IFVALFYLVLTLPLSYGVRVWERRLHRKY 280 IF A+ Y ++ PL+Y + +E +L + + Sbjct: 219 IFAAVLYFIICYPLAYFAKAYENKLKKAH 247 >lin2352_2 [E] COG0765 ABC-type amino acid transport system, permease component Length = 215 Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 79/209 (37%), Positives = 133/209 (63%), Gaps = 5/209 (2%) Query: 72 DHFGQYLEGFRGTVLSSVLALIGSF---IIGTVIAVFRITPVKPLRWFGTGYVEFIRNIP 128 + +G Y GT+++ LA IG I+G+++A+ ++ + LRW Y+EF+R P Sbjct: 6 EKYGNYF--ITGTLITIALAAIGVLCGAILGSLLALMKLAKTRWLRWPAACYIEFVRGTP 63 Query: 129 LLLVVYVFFYGPSALGFTLDGFKAGTIGLTVYTSAFIAEAIRAGIVAVPKGQMEAARSSG 188 LL+ +++ F+G +G + F +G I L++ ++A++AE IRAGI AV KGQMEAARS G Sbjct: 64 LLIQIFIVFFGTQIIGMDVSAFVSGCIALSLNSAAYVAEIIRAGISAVNKGQMEAARSLG 123 Query: 189 LSYMQTMTHVILPQAIKLVIPPLGNQFINLIKNSSVLTLVAGLDLMYFADGISTETYRTF 248 ++ +M ++ILPQA+K ++P LGN+F+ +IK SS+++++ +LM+ + +++ F Sbjct: 124 MTQGASMRYIILPQAVKNILPALGNEFVTVIKESSIVSVIGVTELMFMTGVVQGASFKPF 183 Query: 249 DTYIFVALFYLVLTLPLSYGVRVWERRLH 277 I +L Y VLT LS + V ERR+ Sbjct: 184 IPLIITSLIYFVLTFSLSRLLGVAERRMR 212 >SA1675_2 [E] COG0765 ABC-type amino acid transport system, permease component Length = 205 Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 81/202 (40%), Positives = 130/202 (64%), Gaps = 1/202 (0%) Query: 77 YLEGFRGTVLSSVLALIGSFIIGTVIAVFRITPVKPLRWFGTGYVEFIRNIPLLLVVYVF 136 +L+G + T+L S++ + I+G +A+ +++ +K + W + Y+E +R P+L+ V++ Sbjct: 1 FLKGIKITILISLIGVALGSILGAFVALMKLSKIKIISWIASIYIEILRGTPMLVQVFIV 60 Query: 137 FYG-PSALGFTLDGFKAGTIGLTVYTSAFIAEAIRAGIVAVPKGQMEAARSSGLSYMQTM 195 F+G +ALG + GTI L + +SA+IAE IRAGI AV KGQMEAARS GL+Y QTM Sbjct: 61 FFGITAALGLDISALVCGTIALVINSSAYIAEIIRAGINAVDKGQMEAARSLGLNYRQTM 120 Query: 196 THVILPQAIKLVIPPLGNQFINLIKNSSVLTLVAGLDLMYFADGISTETYRTFDTYIFVA 255 VI+PQAIK ++P LGN+F+ LIK SS+++ + ++M+ A + ++ F + A Sbjct: 121 KSVIMPQAIKNILPALGNEFVTLIKESSIVSTIGVGEIMFNAQVVQGISFDPFTPLLVAA 180 Query: 256 LFYLVLTLPLSYGVRVWERRLH 277 Y VLT L+ + + E RL+ Sbjct: 181 ALYFVLTFVLTRIMNMIEGRLN 202 >Cj0940c [E] COG0765 ABC-type amino acid transport system, permease component Length = 261 Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 81/214 (37%), Positives = 136/214 (63%), Gaps = 2/214 (0%) Query: 66 EFSILTDHFGQYLEGFRGTVLSSVLALIGSFIIGTVIAVFRITPVKPLRWFGTGYVEFIR 125 +FS + + ++L+GF T++ S +L+ S I+G V F ++ + LR+ T Y+E +R Sbjct: 49 DFSAIATYKEKFLQGFLNTLIISFFSLLLSIILGGVFCAFSLSSIVFLRFLSTFYIELVR 108 Query: 126 NIPLLLVVYVFFYG-PSALGFTLDGFKAGTIGLTVYTSAFIAEAIRAGIVAVPKGQMEAA 184 PLL+ V + +Y + LG + + AG I L+ +++A++AE RAGI+++ Q+E+A Sbjct: 109 GTPLLVQVLLIYYIIANNLGLD-NRYVAGVIILSCFSAAYLAEIFRAGILSISISQLESA 167 Query: 185 RSSGLSYMQTMTHVILPQAIKLVIPPLGNQFINLIKNSSVLTLVAGLDLMYFADGISTET 244 R+ GL MQ +VI PQA+K ++ PL QF NLIK+SS+L+++A +L A I++ T Sbjct: 168 RALGLKEMQVFAYVIFPQALKNILAPLSGQFANLIKDSSLLSVIAVNELTQSAQEINSYT 227 Query: 245 YRTFDTYIFVALFYLVLTLPLSYGVRVWERRLHR 278 + T + Y+ +A+ YLVLTLP+S R ER+ + Sbjct: 228 FATLEAYVILAITYLVLTLPISIFSRYLERKCQK 261 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.331 0.146 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,178,152 Number of extensions: 697548 Number of successful extensions: 2593 Number of sequences better than 1.0e-05: 203 Number of HSP's gapped: 2458 Number of HSP's successfully gapped: 203 Length of query: 280 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 175 Effective length of database: 26,268,361 Effective search space: 4596963175 Effective search space used: 4596963175 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 115 (48.9 bits)