BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0085.0001.p (284 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_glnH [ET] COG0834 ABC-type amino acid transport/signal transd... 326 3e-89 Cgl2693 [ET] COG0834 ABC-type amino acid transport/signal transd... 144 2e-34 TM0593 [ET] COG0834 ABC-type amino acid transport/signal transdu... 139 7e-33 Cj0921c [ET] COG0834 ABC-type amino acid transport/signal transd... 137 2e-32 Cgl1906 [ET] COG0834 ABC-type amino acid transport/signal transd... 133 3e-31 >BS_glnH [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 273 Score = 326 bits (835), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 161/282 (57%), Positives = 211/282 (74%), Gaps = 9/282 (3%) Query: 3 MSKSFKCLSVLMIAAMLVIAGCXXXXXXXXXXXXXXXXXXXXTDSKAIAKIKDRGKLLVG 62 M K F L+++ + A++++A C + +A IKD K++ G Sbjct: 1 MKKIF-SLALISLFAVILLAACGSKGSNGEASKE--------SKKDTLAAIKDNDKIVFG 51 Query: 63 VKYDTRLFGLKDPASGKVEGFDIDISKAIAKHILGDENAIELKEVTSKTRIPMLNNGEID 122 VK DTRLFGLK+P+SG++EGFDIDI+K IAK ILGDE + KEVTSKTRIPML NG+ID Sbjct: 52 VKTDTRLFGLKNPSSGEIEGFDIDIAKQIAKDILGDEKKAQFKEVTSKTRIPMLQNGDID 111 Query: 123 MVVATMTITEERKKEVDFSDVYFQAGQSLLVKKGSPITGIEDVTKDTKILGSKGATSIKN 182 +VATMTITEERKKEVDFSDVYF+AGQSLLVKKGS I +E++ K +K+L KG+TS +N Sbjct: 112 AIVATMTITEERKKEVDFSDVYFEAGQSLLVKKGSKIKSVENLGKGSKVLAVKGSTSSQN 171 Query: 183 IKEKVPGVTVLEFDNYQDAFSALKAGQGDALTTDDAILYGMAAQDPGYEVVGKPFTDEPY 242 I+EK P +VLEF+NY +AF+ALK+GQGDALTTD+AILYGMA ++ Y++ GKPFTDEPY Sbjct: 172 IREKAPEASVLEFENYAEAFTALKSGQGDALTTDNAILYGMADENKNYQLTGKPFTDEPY 231 Query: 243 GIAVQKGNTDVVKAVNDTLAELKANGEYDAIYTKWIGKAPAK 284 GIAV+KG + + K +N +L ++K++G YD IY KWI + PA+ Sbjct: 232 GIAVKKGQSALAKEINASLKKMKSDGRYDEIYKKWIKEDPAE 273 >Cgl2693 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 344 Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 135/241 (56%), Gaps = 6/241 (2%) Query: 45 TDSKAIAKIKDRGKLLVGVKYDTRLFGLKDPASGKVEGFDIDISKAIAKHILGDENAIEL 104 T + + I +RG+++VGV L +DP +G++ GF++++++ I++ I GD N ++ Sbjct: 81 TPEERVPGIVNRGRIIVGVDQSQNLLSFRDPVTGELRGFEVELAREISRDIFGDPNKVDF 140 Query: 105 KEVTSKTRIPMLNNGEIDMVVATMTITEERKKEVDFSDVYFQAGQSLLVKKGSPITGIED 164 + V S R+ L+ G++D+V+ ++TIT+ER K V+FS Y + +L + S IT I D Sbjct: 141 RFVGSSDRLRSLDQGDVDIVIRSVTITDERAKLVEFSTPYLRTQTRMLTMESSGITSIAD 200 Query: 165 VTKDTKILGSKGATSIKNIKEKVPGVTVLEFDNYQDAFSALKAGQGDALTTDDAILYGMA 224 + T I + G+TS++ + P ++L+ N+ D AL+ Q + DD IL G+A Sbjct: 201 LPGHT-ICVTDGSTSLQRARTIAPEASILKTRNWSDCLMALQQHQAQVILGDDVILSGIA 259 Query: 225 AQDPGYEVVGKPFTDEPYGIA-----VQKGNTDVVKAVNDTLAELKANGEYDAIYTKWIG 279 AQDP E++ YG+A + ++ +++ VN T+ ++ + + ++ W G Sbjct: 260 AQDPYTEILDTSLDSHSYGVAAASTTAETDSSGLIRQVNYTIERIRTDRMWWTMFDDWFG 319 Query: 280 K 280 Sbjct: 320 P 320 >TM0593 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 246 Score = 139 bits (349), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 93/240 (38%), Positives = 136/240 (56%), Gaps = 17/240 (7%) Query: 47 SKAIAKIKDRGKLLVGVKYDTRLFGLKDPASGKVEGFDIDISKAIAKHILGDENAIELK- 105 S AI +IK RG LLVG+ D F D +G + GFD+D++K IA+ + +ELK Sbjct: 18 SGAIDEIKSRGYLLVGLSADFPPFEFVD-ENGNIVGFDVDLAKEIARRL-----GVELKI 71 Query: 106 -EVTSKTRIPMLNNGEIDMVVATMTITEERKKEVDFSDVYFQAGQSLLVKKGS---PITG 161 ++T IP L +ID++++ MTITEERKK V FSD YF AGQ ++V+K S P T Sbjct: 72 VDMTFDGLIPSLLTKKIDVIISGMTITEERKKVVAFSDPYFDAGQVIVVRKDSDFRPKTY 131 Query: 162 IEDVTKDTKI-LGSKGATSIKNIKEKVPGVTVLEFDNYQDAFSALKAGQGDALTTDDAIL 220 + V K + +G+ G + K G+ V+ FD + DAF LK G+ DA+ D A Sbjct: 132 EDLVGKTVAVQIGTTGDIEV----SKYDGIKVVRFDKFTDAFLELKRGRADAVVLDSATA 187 Query: 221 YGMAAQDPGYEVVGKPFTDEPYGIAVQKGNTDVVKAVNDTLAELKANGEYDAIYTKWIGK 280 A++P + + E YGIAV+K +TD+++ +N L ELK + YD + KW + Sbjct: 188 RAFVAKNPDLVISSGVLSSEQYGIAVRKEDTDLLEFINSVLRELKKS-PYDVLIEKWFSE 246 >Cj0921c [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 259 Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 91/229 (39%), Positives = 134/229 (58%), Gaps = 9/229 (3%) Query: 53 IKDRGKLLVGVKYDTRLFGLKDPASGKVEGFDIDISKAIAKHILGDENAIELKEVTSKTR 112 IK +G+L+VGVK D + L D A+G+++GF++D++K +AK ILGD+ I+L V +KTR Sbjct: 34 IKSKGQLIVGVKNDVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKKIKLVAVNAKTR 93 Query: 113 IPMLNNGEIDMVVATMTITEERKKEVDFSDVYFQAGQSLLVKKGSPITGIEDVTKDTKIL 172 P+L+NG +D V+AT TIT ERK+ +FS+ Y+Q LLV K + D+ K I Sbjct: 94 GPLLDNGSVDAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKKYKSLADM-KGANIG 152 Query: 173 GSKGATSIKNIKE--KVPGVTV--LEFDNYQDAFSALKAGQGDALTTDDAILYGMAAQDP 228 ++ AT+ K I E K G+ V EF +Y +AL A + DA + D +IL G D Sbjct: 153 VAQAATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYV--DD 210 Query: 229 GYEVVGKPFTDEPYGIAVQKGNTDVVKAVNDTLAELKANGEYDAIYTKW 277 E++ F + YGI +K + K V+D + E K E DA+ KW Sbjct: 211 KSEILPDSFEPQSYGIVTKKDDPAFAKYVDDFVKEHK--NEIDALAKKW 257 >Cgl1906 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 295 Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 129/237 (54%), Gaps = 12/237 (5%) Query: 55 DRGKLLVGVKYDTRLFGLKDPASGKVEGFDIDISKAIAKHILGDEN----AIELKEVTSK 110 + G + VG KYD GL++P + + G D+D+++ + I D+ IE +E S Sbjct: 41 ENGSVNVGTKYDQPGLGLRNPDN-SMSGLDVDVAEYVVNSIADDKGWDHPTIEWRESPSA 99 Query: 111 TRIPMLNNGEIDMVVATMTITEERKKEVDFSDVYFQAGQSLLVKKGSP-ITGIEDVTKDT 169 R ++ NGE+DM+ AT +I R + V+F Y Q+LLV++ I +ED+ Sbjct: 100 QRETLIQNGEVDMIAATYSINAGRSESVNFGGPYLLTHQALLVRQDDDRIETLEDLDNGL 159 Query: 170 KILGSKGATSIKNIKEKVPGVTVLEFDNYQDAFSALKAGQGDALTTDDAILYGMAAQDPG 229 + G+T + +K+ +PGV + E+D Y AL G DALTTD IL+G + Q G Sbjct: 160 ILCSVSGSTPAQKVKDVLPGVQLQEYDTYSSCVEALSQGNVDALTTDATILFGYSQQYEG 219 Query: 230 -YEVV-----GKPFTDEPYGIAVQKGNTDVVKAVNDTLAELKANGEYDAIYTKWIGK 280 + VV G+PFTDE YGI ++K + + A+N L + A+G + + T+ +G+ Sbjct: 220 DFRVVEMEKDGEPFTDEYYGIGLKKDDQEGTDAINAALERMYADGTFQRLLTENLGE 276 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.314 0.133 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,534,723 Number of extensions: 855979 Number of successful extensions: 2488 Number of sequences better than 1.0e-05: 150 Number of HSP's gapped: 2231 Number of HSP's successfully gapped: 153 Length of query: 284 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 179 Effective length of database: 26,268,361 Effective search space: 4702036619 Effective search space used: 4702036619 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 115 (48.9 bits)