BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0081.0026.p
         (207 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

lin0128 [M] COG5632 N-acetylmuramoyl-L-alanine amidase                123   3e-28

>lin0128 [M] COG5632 N-acetylmuramoyl-L-alanine amidase
          Length = 289

 Score =  123 bits (308), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/126 (47%), Positives = 80/126 (63%), Gaps = 7/126 (5%)

Query: 4   LIERCYACGVPILITQGLRTAAEQDALYAQGRTKSGAIVTNARGGQSYHNYGLAVDFALL 63
           +I++    G+ + + QG R+ AEQ+ALYAQGRTK GAIVTNA+GGQS HNYG+AVD  L 
Sbjct: 32  VIKKMAKEGIYLCVAQGYRSTAEQNALYAQGRTKPGAIVTNAKGGQSNHNYGVAVDLCLY 91

Query: 64  LPNGSSVSWDMARDGDNDQAADWLEVVQQAKRLGFEWGGDWTSLKDYPHFQMSFGLTLSK 123
             +G  V W+          + W +VV   K  GF+WGGDW S KDYPHF++   ++  K
Sbjct: 92  TNDGKDVIWE-------STTSRWKKVVAAMKAEGFKWGGDWKSFKDYPHFELCDAVSGEK 144

Query: 124 LRAGAQ 129
           + A  Q
Sbjct: 145 IPAATQ 150


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.316    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 14,977,825
Number of extensions: 621140
Number of successful extensions: 1227
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1227
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 38,378,431
Length adjustment: 102
Effective length of query: 105
Effective length of database: 26,614,363
Effective search space: 2794508115
Effective search space used: 2794508115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)