BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0081.0011.p
         (233 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_yqbP [S] COG1652 Uncharacterized protein containing LysM domain    101   8e-22
BS_xkdP [S] COG1652 Uncharacterized protein containing LysM domain     89   4e-18

>BS_yqbP [S] COG1652 Uncharacterized protein containing LysM domain
          Length = 219

 Score =  101 bits (252), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 109/211 (51%), Gaps = 26/211 (12%)

Query: 4   YGFFLSFNELEDLFRLPVNPETLEIKESGDSKSYTIVDLGEINAIAYPKLTEITIESIFP 63
           Y F++S  + +D  RLPV PE ++I  +  ++S  +   GEI  I  P   EI+  S FP
Sbjct: 6   YEFWIS--QGKDKLRLPVLPEQIDISNTIQNESVKVASFGEITFIDKPGAKEISFSSFFP 63

Query: 64  AQHYPFVLVRSEGPNRLLRPFEYVEMIQKWMKSRRPIRFVLSGVNLKGEQDHSAVPNDLA 123
            +H P    +         P   +  I+KW+KS++P++F+++G  +              
Sbjct: 64  KKHSPLAEYKG-----FPSPENAIAKIEKWVKSKKPVQFLITGTKI-------------- 104

Query: 124 LNMAMSIESFTWKLSAGTSGDVEYSLSLKKYVFYQASPVKIVKGQVKAEPKRASDKAVPK 183
            N+  SIE F++       GD +Y + LK+Y    ASP KI + +   +  +   K+ PK
Sbjct: 105 -NLTCSIEVFSYTEGQKDIGDRDYEIKLKEY--KTASPRKIKQKKKTKK--KRPSKSAPK 159

Query: 184 TYTMKAGDSLWSIAKKILGDGQKYKVIQKLN 214
           TYT+K GD+LW +A K  GD  K++ I K+N
Sbjct: 160 TYTVKKGDTLWDLAGKFYGDSTKWRKIWKVN 190


>BS_xkdP [S] COG1652 Uncharacterized protein containing LysM domain
          Length = 235

 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 108/211 (51%), Gaps = 26/211 (12%)

Query: 4   YGFFLSFNELEDLFRLPVNPETLEIKESGDSKSYTIVDLGEINAIAYPKLTEITIESIFP 63
           Y F++S  + +D  RLPV P+ L I  +  +++  +   G++  I      EI+  S FP
Sbjct: 22  YEFWIS--QGKDKLRLPVLPDQLSISNTVQNETVKVAKFGDLTFIDEQGAKEISFSSFFP 79

Query: 64  AQHYPFVLVRSEGPNRLLRPFEYVEMIQKWMKSRRPIRFVLSGVNLKGEQDHSAVPNDLA 123
            ++ P    ++        P   +  I+KWMK+++P++F+++G  +              
Sbjct: 80  KKYSPIAEYQN-----FPSPENAITKIEKWMKAKKPVQFLITGTKV-------------- 120

Query: 124 LNMAMSIESFTWKLSAGTSGDVEYSLSLKKYVFYQASPVKIVKGQVKAEPKRASDKAVPK 183
            N+  SIE F++       GD  + + LK+Y    ASP + +K + K + KR S KA PK
Sbjct: 121 -NLTCSIEGFSYSEGQQDIGDRSFDIQLKEY--KTASP-RKIKQKKKTKAKRPS-KAAPK 175

Query: 184 TYTMKAGDSLWSIAKKILGDGQKYKVIQKLN 214
           TYT+K GD+LW IA +  G+  +++ I   N
Sbjct: 176 TYTVKKGDTLWDIAGRFYGNSTQWRKIWNAN 206


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.316    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 16,975,194
Number of extensions: 644929
Number of successful extensions: 1083
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1089
Number of HSP's successfully gapped: 2
Length of query: 233
Length of database: 38,378,431
Length adjustment: 103
Effective length of query: 130
Effective length of database: 26,499,029
Effective search space: 3444873770
Effective search space used: 3444873770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)