BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0079.0001.p
         (162 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH1140 [G] COG3839 ABC-type sugar transport systems, ATPase comp...   171   4e-43
BS_msmX [G] COG3839 ABC-type sugar transport systems, ATPase com...   163   1e-40
TM1276 [G] COG3839 ABC-type sugar transport systems, ATPase comp...   162   3e-40
PM1763 [G] COG3839 ABC-type sugar transport systems, ATPase comp...   159   1e-39
BS_yurJ [G] COG3839 ABC-type sugar transport systems, ATPase com...   157   7e-39

>BH1140 [G] COG3839 ABC-type sugar transport systems, ATPase components
          Length = 365

 Score =  171 bits (434), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 82/114 (71%), Positives = 98/114 (85%), Gaps = 1/114 (0%)

Query: 1   MAGVRLEHIFKKYPGSDKATVIDINLDIKDKEFLVLVGPSGCGKSTTLRMIAGLEEISEG 60
           MA ++L++++K Y G D   V D NLDIKDKEF+V VGPSGCGKSTTLRMIAGLE+IS+G
Sbjct: 1   MAEIQLKNVYKIYDG-DVQAVTDFNLDIKDKEFIVFVGPSGCGKSTTLRMIAGLEDISKG 59

Query: 61  KMYIGDRVVNDVAPKDRDIAMVFQSYALYPHMSVYQNMAFGLKLRKVKKEEIDR 114
            + IG + +NDVAPKDRDIAMVFQ+YALYPHM+VY NMAFGLKLRK KK+EID+
Sbjct: 60  DLLIGGKRMNDVAPKDRDIAMVFQNYALYPHMNVYDNMAFGLKLRKFKKDEIDK 113


>BS_msmX [G] COG3839 ABC-type sugar transport systems, ATPase components
          Length = 365

 Score =  163 bits (412), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 80/114 (70%), Positives = 93/114 (81%), Gaps = 1/114 (0%)

Query: 1   MAGVRLEHIFKKYPGSDKATVIDINLDIKDKEFLVLVGPSGCGKSTTLRMIAGLEEISEG 60
           MA +R+EHI+K Y   + A V D NL I DKEF+V VGPSGCGKSTTLRM+AGLEEIS+G
Sbjct: 1   MAELRMEHIYKFYDQKEPA-VDDFNLHIADKEFIVFVGPSGCGKSTTLRMVAGLEEISKG 59

Query: 61  KMYIGDRVVNDVAPKDRDIAMVFQSYALYPHMSVYQNMAFGLKLRKVKKEEIDR 114
             YI  + VNDVAPKDRDIAMVFQ+YALYPHM+VY N+AFGLKLRK+ K EI +
Sbjct: 60  DFYIEGKRVNDVAPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKMPKPEIKK 113


>TM1276 [G] COG3839 ABC-type sugar transport systems, ATPase components
          Length = 369

 Score =  162 bits (409), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 80/114 (70%), Positives = 96/114 (84%), Gaps = 1/114 (0%)

Query: 1   MAGVRLEHIFKKYPGSDKATVIDINLDIKDKEFLVLVGPSGCGKSTTLRMIAGLEEISEG 60
           MA V LE++ K Y     A V + NL ++DKEF+VL+GPSGCGK+TTLRMIAGLEEI++G
Sbjct: 3   MAQVVLENVTKVYENKVVA-VKNANLVVEDKEFVVLLGPSGCGKTTTLRMIAGLEEITDG 61

Query: 61  KMYIGDRVVNDVAPKDRDIAMVFQSYALYPHMSVYQNMAFGLKLRKVKKEEIDR 114
           K+YI  +VVNDV PKDRDIAMVFQ+YALYPHM+VY+NMAFGLKLRK  K+EIDR
Sbjct: 62  KIYIDGKVVNDVEPKDRDIAMVFQNYALYPHMTVYENMAFGLKLRKYPKDEIDR 115


>PM1763 [G] COG3839 ABC-type sugar transport systems, ATPase components
          Length = 368

 Score =  159 bits (403), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 79/114 (69%), Positives = 91/114 (79%), Gaps = 1/114 (0%)

Query: 1   MAGVRLEHIFKKYPGSDKATVIDINLDIKDKEFLVLVGPSGCGKSTTLRMIAGLEEISEG 60
           MA + L +I K+Y     A V D NL+++D+EF+ LVGPSGCGKST LRMIAGLE+IS G
Sbjct: 1   MATLLLNNINKRYDNGFHA-VQDFNLNVEDQEFIALVGPSGCGKSTLLRMIAGLEDISSG 59

Query: 61  KMYIGDRVVNDVAPKDRDIAMVFQSYALYPHMSVYQNMAFGLKLRKVKKEEIDR 114
           + YI +R+VNDV  KDRDIAMVFQSYALYPHMSVY NMAF LKLRK  KEEIDR
Sbjct: 60  EFYIDERLVNDVEAKDRDIAMVFQSYALYPHMSVYDNMAFALKLRKFPKEEIDR 113


>BS_yurJ [G] COG3839 ABC-type sugar transport systems, ATPase components
          Length = 367

 Score =  157 bits (397), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 75/112 (66%), Positives = 89/112 (79%), Gaps = 2/112 (1%)

Query: 1   MAGVRLEHIFKKYPGSDKATVIDINLDIKDKEFLVLVGPSGCGKSTTLRMIAGLEEISEG 60
           MA +  EH+ K Y    + TV D +LD+KDKE LVLVGPSGCGKSTTLRM+AGLE ISEG
Sbjct: 1   MASLTFEHVKKSY--HSQLTVKDFDLDVKDKELLVLVGPSGCGKSTTLRMVAGLESISEG 58

Query: 61  KMYIGDRVVNDVAPKDRDIAMVFQSYALYPHMSVYQNMAFGLKLRKVKKEEI 112
            + I    VND+ PK+RDIAMVFQ+YALYPHM+V+ NMAFGLKLRK+ K+EI
Sbjct: 59  NLLIDGERVNDLPPKERDIAMVFQNYALYPHMTVFDNMAFGLKLRKMAKQEI 110


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.323    0.139    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 11,057,899
Number of extensions: 389388
Number of successful extensions: 14628
Number of sequences better than 1.0e-05: 841
Number of HSP's gapped: 14435
Number of HSP's successfully gapped: 851
Length of query: 162
Length of database: 38,378,431
Length adjustment: 98
Effective length of query: 64
Effective length of database: 27,075,699
Effective search space: 1732844736
Effective search space used: 1732844736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)