BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0078.0034.p (194 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SA0330 [J] COG1670 Acetyltransferases, including N-acetylases of... 92 4e-19 PA3248 [J] COG1670 Acetyltransferases, including N-acetylases of... 75 9e-14 SP0566 [J] COG1670 Acetyltransferases, including N-acetylases of... 70 1e-12 lin2976 [J] COG1670 Acetyltransferases, including N-acetylases o... 70 2e-12 SMc00075 [J] COG1670 Acetyltransferases, including N-acetylases ... 69 5e-12 >SA0330 [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins Length = 181 Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 3/176 (1%) Query: 15 GSFTSSRLLIRAAQWGDGDAVNEAVHESLAELRPWMPWAQIAPTAEESEASIRRSHLQFL 74 G + ++ ++ + D +A+ V+ S LR W+PW ++ A I+R LQF Sbjct: 3 GMKVNEQITLKILEAHDTEALFNLVNRSRNSLREWLPWVDATEQPSDTRAFIKRGLLQFA 62 Query: 75 ERKDLRLLLFNKETGQLVGSSGLHRIDWQTRKFEIGYWVRTSCSRQGYISEAVTAIADYA 134 + + ++ + G LVG GLH I+ RK +GY++ G +++AV A+ Y Sbjct: 63 DGNGFQCGIWYE--GTLVGVIGLHEINHMHRKTSLGYYLDKQFEGHGIMTQAVEALIKYC 120 Query: 135 IRELGANRIEIRCDSRNTQSARVAERLGFTLEGIIRNDKRDVAGTLRDTLLFSKVR 190 EL NRIEI N +S + ERLGFT EG++R D + G + ++S ++ Sbjct: 121 FEELDLNRIEISAAVNNEKSRAIPERLGFTREGMLR-DNELLNGIYSSSYIYSLLK 175 >PA3248 [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins Length = 183 Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 72/146 (49%), Gaps = 3/146 (2%) Query: 45 ELRPWMPWAQIAPTAEESEASIRRSHLQFLERKDLRLLLFNKETGQLVGSSGLHRIDWQT 104 L PWMPW + + +++ I + ER+ R + E+G LVG LH + Sbjct: 33 HLAPWMPWVPLTQSVDDTRRFIGEGQRLWAERRSCRCGIV--ESGCLVGVIDLHDFTEDS 90 Query: 105 RKFEIGYWVRTSCSRQGYISEAVTAIADYAIRELGANRIEIRCDSRNTQSARVAERLGFT 164 R IGYW+ S +G ++ A+ + R+ IRC + N +S R AER GF Sbjct: 91 RSASIGYWLAASAQGRGLLARALGKTIELGFLGYDRQRLVIRCSTENLRSQRAAERQGFR 150 Query: 165 LEGIIRNDKRDVAGTLRDTLLFSKVR 190 +G+IR ++ +AG D +++ +R Sbjct: 151 RDGVIRANE-IIAGRAHDHAIYTLLR 175 >SP0566 [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins Length = 186 Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 39/105 (37%), Positives = 60/105 (57%), Gaps = 2/105 (1%) Query: 86 KETGQLVGSSGLHRIDWQTRKFEIGYWVRTSCSRQGYISEAVTAIADYAIRELGANRIEI 145 K T +++GS + + E+GY + +GY+ EA ++ D A +ELG ++IE+ Sbjct: 78 KGTDKVIGSVDFNHLHADD-VLELGYTLHPDYWGRGYVPEAACSLIDLAFKELGLHKIEL 136 Query: 146 RCDSRNTQSARVAERLGFTLEGIIRNDKRDVAGTLRDTLLFSKVR 190 C N QS RV+E+LGFTLE IR D++D G D L + +R Sbjct: 137 TCFGYNLQSQRVSEKLGFTLEARIR-DRKDAQGNCCDDLRYGLLR 180 >lin2976 [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins Length = 301 Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 7/137 (5%), Positives = 15/137 (10%), Gaps = 5/137 (3%) Query: 51 PWAQIAPTAEESEASIRRSHLQFLERKDLRLLLFNKETGQLVGSSGLHRIDWQTRKFEIG 110 +I + +S G Sbjct: 43 TRHRIVGIHT----EGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEG 98 Query: 111 YWVRTSCSRQGYISEAVTAIADYAIRELGANRIEIRCDSRNTQSARVAERLGFTLEGIIR 170 A A+ ++ + + A L Sbjct: 99 TRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET 158 Query: 171 NDKRDVAGTLRDTLLFS 187 Sbjct: 159 -GLNVDTIAAIVRKHLP 174 >SMc00075 [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins Length = 203 Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 3/172 (1%) Query: 18 TSSRLLIRAAQWGDGDAVNEAVHESLAELRPWMP-WAQIAPTAEESEASIRRSHLQFLER 76 S L+R ++ D ES A L PW P W T + + R+ +F Sbjct: 19 ASQHYLLRLPRYADYRQWYRLRSESRAFLEPWEPTWRADEMTEGAFRSRVNRNEQEFASG 78 Query: 77 KDLRLLLFNKETGQLVGSSGLHRID-WQTRKFEIGYWVRTSCSRQGYISEAVTAIADYAI 135 + + L LF+K L+G + I + IGYW+ + QG++ EA+ Y Sbjct: 79 QAVPLFLFHKPDETLLGGLTIGHIRRGAAQNCMIGYWMGQKHAGQGHMYEALKLTIPYIF 138 Query: 136 RELGANRIEIRCDSRNTQSARVAERLGFTLEGIIRNDKRDVAGTLRDTLLFS 187 + L +RIE C N +S R+ E+ GF EG +R + + G RD L+FS Sbjct: 139 KGLELHRIEAACIPENARSIRLLEKAGFEREGYLRQYLK-INGQWRDHLMFS 189 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.135 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 13,581,759 Number of extensions: 529949 Number of successful extensions: 996 Number of sequences better than 1.0e-05: 51 Number of HSP's gapped: 995 Number of HSP's successfully gapped: 51 Length of query: 194 Length of database: 38,378,431 Length adjustment: 101 Effective length of query: 93 Effective length of database: 26,729,697 Effective search space: 2485861821 Effective search space used: 2485861821 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 113 (48.1 bits)