BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0078.0005.p (308 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0794 [G] COG4209 ABC-type polysaccharide transport system, per... 382 e-106 SP0090 [G] COG4209 ABC-type polysaccharide transport system, per... 339 3e-93 BH2112 [G] COG4209 ABC-type polysaccharide transport system, per... 162 5e-40 BS_lplB [G] COG4209 ABC-type polysaccharide transport system, pe... 158 8e-39 BH1065 [G] COG4209 ABC-type polysaccharide transport system, per... 158 1e-38 >BH0794 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 312 Score = 382 bits (980), Expect = e-106, Method: Compositional matrix adjust. Identities = 178/307 (57%), Positives = 242/307 (78%) Query: 2 KMIRNIINNKVMLLMVLPGALWFLFFSYLPMVGTVIAFKEYRYSRDGFWASIINSKWVGW 61 + ++NI +N++ LLMVLPG +W L Y+PM G +IAFK++R+ DGF+AS+ +S+WVG Sbjct: 6 QTLKNIYDNRIWLLMVLPGLIWLLVLKYIPMFGQIIAFKDFRFHPDGFFASLYHSEWVGL 65 Query: 62 DNFKFLFTTNDAYVITRNTLLYNAVFILLGLVLSVAMAIVLAEIANKKLAKVYQTGMFLP 121 +NF+FLF+TNDA++ITRNT+LYN VFI+LGLVL+VA+AI+++E+ N+KLAK+YQTGM P Sbjct: 66 ENFQFLFSTNDAFIITRNTVLYNVVFIVLGLVLAVAVAIIISELTNQKLAKIYQTGMLFP 125 Query: 122 YFLSWVVVGYFAFSFLSSESGVLNQILSYFGAEPINWYSEKKYWPVILVLVYLWKALGYN 181 +FLSWVVV YF F+FLS + G+ N ILS +P+ WY+E YWP ++ + WK +G++ Sbjct: 126 HFLSWVVVSYFVFTFLSIDRGLFNTILSAINIDPVAWYNEPGYWPYFIITISQWKGVGFS 185 Query: 182 SVVYLAAIMGIDKSLYEAAMIDGAGKFQQIKNXXXXXXXXXXXXXXXXAIGKIFYADFGL 241 S+VYLAAI+ ID++ YEAA+IDGA K+QQI++ IG IF ADFGL Sbjct: 186 SIVYLAAIVAIDRTYYEAAIIDGASKWQQIRHVTIPMIMPLIIILTILNIGSIFSADFGL 245 Query: 242 FYQVPRNSGTLYSVTNVIDTYVYQGLKSTGEIGMSTAAGLYQSVVGFVLVITSNYIVRKF 301 FYQVPR+SG LYSVTNVIDTYVY+GL + G+IGMSTAAGLYQ+ VGFVL++ +NYIVRK Sbjct: 246 FYQVPRDSGPLYSVTNVIDTYVYRGLMTMGDIGMSTAAGLYQATVGFVLILITNYIVRKI 305 Query: 302 NKDSALF 308 ++++ALF Sbjct: 306 DEENALF 312 >SP0090 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 319 Score = 339 bits (870), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 159/307 (51%), Positives = 222/307 (72%) Query: 2 KMIRNIINNKVMLLMVLPGALWFLFFSYLPMVGTVIAFKEYRYSRDGFWASIINSKWVGW 61 K + + +N + LLMVLPGALW + F Y+P+ G V+AFK+Y + +GF SIINSKWVG Sbjct: 13 KFSKTLRDNWIFLLMVLPGALWLILFFYIPVFGNVVAFKDYHMTSNGFIDSIINSKWVGL 72 Query: 62 DNFKFLFTTNDAYVITRNTLLYNAVFILLGLVLSVAMAIVLAEIANKKLAKVYQTGMFLP 121 DNF+FLF++ DA++ITRNT+LYN FI LGLV+SV +AI+L+E+ +K++ K++QT M P Sbjct: 73 DNFRFLFSSRDAFIITRNTVLYNLGFIFLGLVVSVGIAIILSELRSKRMVKIFQTSMLFP 132 Query: 122 YFLSWVVVGYFAFSFLSSESGVLNQILSYFGAEPINWYSEKKYWPVILVLVYLWKALGYN 181 YFLSWV++ +F +FL+ + GV N +L G + +N+Y++ WP +L+ + +WK GY+ Sbjct: 133 YFLSWVIISFFTDAFLNIDKGVFNHLLESLGLKEVNFYADLGIWPYLLLFLGIWKGFGYS 192 Query: 182 SVVYLAAIMGIDKSLYEAAMIDGAGKFQQIKNXXXXXXXXXXXXXXXXAIGKIFYADFGL 241 SV+Y A IMGID + YEAA +DGA K+Q+I+N A+G IF ADFGL Sbjct: 193 SVMYYATIMGIDPTYYEAATVDGASKWQRIRNVTIPQLTPLVTVLTILAVGNIFRADFGL 252 Query: 242 FYQVPRNSGTLYSVTNVIDTYVYQGLKSTGEIGMSTAAGLYQSVVGFVLVITSNYIVRKF 301 FYQ+P N+G LY+VTNV+D YV+ GL T +IGM+ AAGLYQSVVG +LVI SN + R+ Sbjct: 253 FYQIPHNAGQLYNVTNVLDVYVFNGLTQTADIGMAAAAGLYQSVVGLILVILSNLLARRV 312 Query: 302 NKDSALF 308 + +SALF Sbjct: 313 DPNSALF 319 >BH2112 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 337 Score = 162 bits (411), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 98/301 (32%), Positives = 165/301 (54%), Gaps = 9/301 (2%) Query: 5 RNIINNKVMLLMVLPGALWFLFFSYLPMVGTVIAFKEYRYSRDGFWASIINSKWVGWDNF 64 + K +LLM LP +W + F Y+P+ G IAF+++R +R I + W G+ +F Sbjct: 40 KKCYEQKALLLMSLPFLIWLIIFRYVPLYGWSIAFQDFRPAR-----PIFDQDWAGFKHF 94 Query: 65 KFLFTTNDAYVITRNTLLYNAVFILLGLVLSVAMAIVLAEIANKKLAKVYQTGMFLPYFL 124 FLFT + + RNTL + + ++LG V ++ +AI+L E+ N +V QT ++P+FL Sbjct: 95 TFLFTDPRFFEVLRNTLAMSLINLVLGFVTAIGLAILLNELRNLTFKRVVQTISYMPHFL 154 Query: 125 SWVVVGYFAFSFLSSESGVLNQILSYFG--AEPINWYSEKKYWPVILVLVYLWKALGYNS 182 SWVV + LS E+G++N +L G +EPI W +Y+ I+ +WK +G+N+ Sbjct: 155 SWVVAAGLVSAALSIENGIINIVLMKLGMISEPIMWLGVGEYFWGIIGASDVWKNVGWNT 214 Query: 183 VVYLAAIMGIDKSLYEAAMIDGAGKFQQIKNXXXXXXXXXXXXXXXXAIGKIFYADFGLF 242 ++YLAAI ID YEAA IDGA + Q+I +G I + F Sbjct: 215 IIYLAAITMIDTEQYEAAEIDGATRLQRIWYITLPGMRPVIVILLIMNLGYILESGFEAQ 274 Query: 243 YQVPRNSGTLYSVTNVIDTYVYQGLKSTGEIGMSTAAGLYQSVVGFVLVITSNYIVRKFN 302 Y + N + N +D +V + + G ++TAAG++++VV F+ + ++N+I ++ Sbjct: 275 YLL-MNPMNMDFAEN-LDIFVLRYGINMGNFSLATAAGIFKTVVSFIFLFSANHIAKRLG 332 Query: 303 K 303 + Sbjct: 333 E 333 >BS_lplB [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 318 Score = 158 bits (400), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 95/283 (33%), Positives = 165/283 (58%), Gaps = 9/283 (3%) Query: 23 WFLFFSYLPMVGTVIAFKEYRYSRDGFWASIINSKWVGWDNFKFLFTTNDAYVITRNTLL 82 +FL F YLPM G +IAFK+Y GFW S+WVG+D FK F D + + RNTL+ Sbjct: 41 YFLIFKYLPMWGVLIAFKDYS-PYLGFW----KSEWVGFDYFKDFFMNPDFFRLLRNTLM 95 Query: 83 YNAVFILLGLVLSVAMAIVLAEIANKKLAKVYQTGMFLPYFLSWVVVGYFAFSFLSSESG 142 ++ +L + +A++L E+ + QT +++P+F+SW +V F F + ++G Sbjct: 96 LASLDLLFAFPAPLILALLLNEVRKAVYKRCIQTFIYVPHFVSWTIVVSITFVFFTVDTG 155 Query: 143 VLNQILSYFGAEPINWYSEKKYWPVILVLVYLWKALGYNSVVYLAAIMGIDKSLYEAAMI 202 V+N+++ E I++ S+ ++ ++V+ +WK G+ ++++LAA+ +D+ YEAA++ Sbjct: 156 VINKLIMSLTGEQISFLSDADWFRPMIVMQSIWKETGWGTILFLAALATVDQEQYEAAIM 215 Query: 203 DGAGKFQQIKNXXXXXXXXXXXXXXXXAIGKIFYADFGLFYQVPRNSGTL-YSVTNVIDT 261 DGAG+F+++ + IG + + G F QV + +L SV ++ DT Sbjct: 216 DGAGRFRRMWHITLPAIRSTIIVLLILRIGS--FLNLG-FEQVYLMTNSLNRSVADIFDT 272 Query: 262 YVYQGLKSTGEIGMSTAAGLYQSVVGFVLVITSNYIVRKFNKD 304 YVY + G STA GL++SVVG +L+ +NYI +KF+++ Sbjct: 273 YVYMMGITQGAYSYSTAVGLFKSVVGIILIFGANYIAKKFDQE 315 >BH1065 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 317 Score = 158 bits (400), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 89/287 (31%), Positives = 160/287 (55%), Gaps = 7/287 (2%) Query: 15 LMVLPGALWFLFFSYLPMVGTVIAFKEYRYSRDGFWASIINSKWVGWDNFKFLFTTNDAY 74 ++++P + L F Y PM G V+AF++Y+ W S+WVG +F +F + A Sbjct: 32 VLLIPALVLALIFQYGPMFGIVMAFQDYKP-----WLGFTGSEWVGLQHFITMFEYDYAK 86 Query: 75 VITRNTLLYNAVFILLGLVLSVAMAIVLAEIANKKLAKVYQTGMFLPYFLSWVVVGYFAF 134 + NTL+ + + ++ GL++ + +A++L E+ + + QT ++LPYFLSWV++G Sbjct: 87 QVIWNTLVISVLKMIFGLIVPIIVALLLNEMYQMVVKRTVQTIIYLPYFLSWVILGGILI 146 Query: 135 SFLSSESGVLNQILSYFGAEPINWYSEKKYWPVILVLVYLWKALGYNSVVYLAAIMGIDK 194 LS + G++NQ L FG +PI + ++ +V+ LWK G+N++V+LAAI ++ Sbjct: 147 DVLSPDGGIVNQALGLFGIDPIFFLGSNDWFRTTVVISDLWKETGFNTIVFLAAITAVNP 206 Query: 195 SLYEAAMIDGAGKFQQIKNXXXXXXXXXXXXXXXXAIGKIFYADFGLFYQVPRNSGTLYS 254 +LYEAA++DGA +++Q + ++G I A F + + + +Y Sbjct: 207 NLYEAAVVDGANRWKQTLHITLPAMLPIIIVVATLSLGNILNAGFDQIFNL--YNPLVYQ 264 Query: 255 VTNVIDTYVYQGLKSTGEIGMSTAAGLYQSVVGFVLVITSNYIVRKF 301 ++IDTYVY+ G+ TA GL++S++ VL+I + K+ Sbjct: 265 TGDIIDTYVYRVSLVNGDFSYGTAVGLFKSLISLVLIIIGYRLAYKY 311 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.327 0.141 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,199,433 Number of extensions: 851089 Number of successful extensions: 2715 Number of sequences better than 1.0e-05: 133 Number of HSP's gapped: 2622 Number of HSP's successfully gapped: 133 Length of query: 308 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 202 Effective length of database: 26,153,027 Effective search space: 5282911454 Effective search space used: 5282911454 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 116 (49.3 bits)