BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0078.0004.p (308 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0795 [G] COG0395 ABC-type sugar transport system, permease com... 309 3e-84 lin2116 [G] COG0395 ABC-type sugar transport system, permease co... 288 6e-78 SPy1593 [G] COG0395 ABC-type sugar transport system, permease co... 248 6e-66 SP0091 [G] COG0395 ABC-type sugar transport system, permease com... 244 1e-64 BH1066 [G] COG0395 ABC-type sugar transport system, permease com... 170 3e-42 >BH0795 [G] COG0395 ABC-type sugar transport system, permease component Length = 322 Score = 309 bits (792), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 151/300 (50%), Positives = 196/300 (65%) Query: 9 KKERDFHKLSKTWNVLFNLFAGIFAFLCXXXXXXXXXXSFTDEGTLARDGYSLFPAKWSL 68 KK + + S + N+ + G FAFLC S T E +LA +GY + P++WS Sbjct: 23 KKTYNPYGFSGSTNIFMHTLIGTFAFLCIFPFIYVIIISLTSEQSLAMNGYRIIPSEWSF 82 Query: 69 AAYRYVFESGDMLLRSYXXXXXXXXXXXXXXXXXXXXYAYAISRKSFRYRNXXXXXXXXT 128 AYRY+++ + R+Y YAYAISRK F YR T Sbjct: 83 DAYRYLWQMRSEVFRAYGVTIFITVVGTLMSVSIIALYAYAISRKQFLYRKLFTFIAFFT 142 Query: 129 MLFNGGLVPTYIIVTQFLGLKDTIWALVMPLAVNAFYIMILRTFYSTSVPDALIESGKID 188 MLF+GG+VP YI++TQFLGLK+++WAL++P+AVNAFYI+I+RTF+ SVP+A++ES +ID Sbjct: 143 MLFSGGMVPFYIVMTQFLGLKNSVWALILPMAVNAFYIIIMRTFFQRSVPEAILESARID 202 Query: 189 GAGEFRIFXXXXXXXXXXXXATIALFSTLGYWNDWFNALLYIDDPNLVPLQSMLMRIETS 248 GAGEFRIF ATIALFSTL YWNDWFNALL+IDDP LVPLQS+LMRIE + Sbjct: 203 GAGEFRIFFKIVLPLSIPGIATIALFSTLAYWNDWFNALLFIDDPKLVPLQSLLMRIENN 262 Query: 249 MQFIMQXXXXXXXXXEALRSMPQDTSRMAMVVLATGPIIFAYPFFQRYFIQGLTVGAVKE 308 + FI Q L S+PQD++RMAMVV+AT PI +YPFFQ+YF++GLT+G VKE Sbjct: 263 LDFIRQNAMLSSQNSALLDSIPQDSARMAMVVIATLPIALSYPFFQKYFVKGLTIGGVKE 322 >lin2116 [G] COG0395 ABC-type sugar transport system, permease component Length = 323 Score = 288 bits (738), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 139/300 (46%), Positives = 189/300 (63%), Gaps = 1/300 (0%) Query: 9 KKERDFHKLSKTWNVLFNLFAGIFAFLCXXXXXXXXXXSFTDEGTLARDGYSLFPAKWSL 68 K +D K NV N+ A +C SF+ E +LA +G+ L P +WS+ Sbjct: 25 KPAKDIIGFGKKMNVAMNVMLAFLALICIFPFLYIIVISFSSETSLAANGFQLIPKEWSM 84 Query: 69 AAYRYVFESGDMLLRSYXXXXXXXXXXXXXXXXXXXXYAYAISRKSFRYRNXXXXXXXXT 128 AY Y+++ LL+SY Y+YAISR F+YR T Sbjct: 85 EAYEYLWKMKGQLLQSYGITIVVTVIGTVCSVAMIALYSYAISRPQFKYRRQFTFIAFFT 144 Query: 129 MLFNGGLVPTYIIVTQFLGLKDTIWALVMPLAVNAFYIMILRTFYSTSVPDALIESGKID 188 MLF+GG+VP YI++TQFL L+++IWA+++PLA+NAFYIMI+RTF+ S+P+ ++E+ +I+ Sbjct: 145 MLFSGGMVPAYIVMTQFLHLRNSIWAMILPLAMNAFYIMIMRTFFLRSIPEPILEAARIE 204 Query: 189 GAGEFRIFXXXXXXXXXXXXATIALFSTLGYWNDWFNALLYIDDPNLVPLQSMLMRIETS 248 GAGE RIF ATIALFSTLGYWNDWF A LYID+PNLVPLQS+LM+IE + Sbjct: 205 GAGELRIFLQMVVPLSLPGLATIALFSTLGYWNDWFQASLYIDNPNLVPLQSLLMKIENN 264 Query: 249 MQFIMQXXXXXXXXXEALRSMPQDTSRMAMVVLATGPIIFAYPFFQRYFIQGLTVGAVKE 308 ++F M+ A +S+PQD ++MAMVV++T PI YPFFQ+YFI GLT+G VKE Sbjct: 265 LEF-MRQNSEIAYTAGAFKSIPQDGAKMAMVVISTLPIAITYPFFQKYFISGLTIGGVKE 323 >SPy1593 [G] COG0395 ABC-type sugar transport system, permease component Length = 308 Score = 248 bits (634), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 124/289 (42%), Positives = 173/289 (59%), Gaps = 2/289 (0%) Query: 22 NVLFNLFAGIFAFLCXXXXXXXXXXSFTDEGTLARDGYSLFPAKWSLAAYRYVFESG--D 79 N +FN+ G+FA C SFTDE L GYS FP WS AY+Y+F+ Sbjct: 20 NAIFNILIGLFAISCIIPFIFVIIISFTDESYLINHGYSFFPDVWSTKAYQYIFQGAMSH 79 Query: 80 MLLRSYXXXXXXXXXXXXXXXXXXXXYAYAISRKSFRYRNXXXXXXXXTMLFNGGLVPTY 139 ++RS+ YAYAISR F YR TMLF G+V Y Sbjct: 80 RIMRSFGISVFITVVGTFINTTMTSTYAYAISRPYFPYRRFFTVYALITMLFAPGMVANY 139 Query: 140 IIVTQFLGLKDTIWALVMPLAVNAFYIMILRTFYSTSVPDALIESGKIDGAGEFRIFXXX 199 ++V+ L LKDT+WAL++P+A+ F I+++RTF+ +VPD++IES ++DGA E+ IF Sbjct: 140 LVVSNLLHLKDTVWALILPMALGPFGILVMRTFFKKTVPDSIIESARMDGASEWMIFMKI 199 Query: 200 XXXXXXXXXATIALFSTLGYWNDWFNALLYIDDPNLVPLQSMLMRIETSMQFIMQXXXXX 259 ATI+LFS L YWNDWFNALLY+ NL P+Q +LM+I++++Q + Q Sbjct: 200 VLPLAVPGIATISLFSALTYWNDWFNALLYVQSENLYPMQYLLMKIQSNLQALAQNAGMS 259 Query: 260 XXXXEALRSMPQDTSRMAMVVLATGPIIFAYPFFQRYFIQGLTVGAVKE 308 ++L S+P+++ RMA+VV+AT PI YPFFQ+YF+ GLT+G VKE Sbjct: 260 AQMADSLASLPKESVRMAIVVIATLPIALTYPFFQKYFVGGLTIGGVKE 308 >SP0091 [G] COG0395 ABC-type sugar transport system, permease component Length = 307 Score = 244 bits (623), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 122/294 (41%), Positives = 176/294 (59%), Gaps = 3/294 (1%) Query: 15 HKLSKTWNVLFNLFAGIFAFLCXXXXXXXXXXSFTDEGTLARDGYSLFPAKWSLAAYRYV 74 H SK ++ F++ +G+ A C S TDE +L + GYS FP+++ L + ++ Sbjct: 17 HSFSKKADIFFSIISGLIALSCILPFVFVIIISVTDEKSLLQYGYSFFPSQFGLDGFEFL 76 Query: 75 FESGDMLLRSYXXXXXXXXXXXXXXXXXXXXYAYAISRKSFRYRNXXXXXXXXTMLFNGG 134 + D +L++ YAYAISR +F+YR +MLFN G Sbjct: 77 AQFKDKILQALFISVFVTVVGTLTNVFITTTYAYAISRTTFKYRRFFTIFVLLSMLFNAG 136 Query: 135 LVPTYIIVTQFLGLKDTIWALVMPLAVNAFYIMILRTFYSTSVPDALIESGKIDGAGEFR 194 LVP YI+VT+ L L DT+WAL++P+ ++ F I+++R+F+ ++P+A++ES +IDGA E R Sbjct: 137 LVPGYIMVTRVLQLGDTVWALIVPMLLSPFNIILMRSFFKKTIPEAILESARIDGASEAR 196 Query: 195 IFXXXXXXXXXXXXATIALFSTLGYWNDWFNALLYIDDPNLVPLQSMLMRIETSMQFIMQ 254 IF ATI L + LG+WNDWFNALLYI NL PLQ +LM+I+ +M +I + Sbjct: 197 IFFQICLPLSLPGIATITLLTALGFWNDWFNALLYIKSDNLYPLQYLLMQIQQNMDYIAK 256 Query: 255 XXXXXXXXXEALRSMPQDTSRMAMVVLATGPIIFAYPFFQRYFIQGLTVGAVKE 308 AL P++T RMAMVV+AT PI YPFFQRYF++GLT+G VKE Sbjct: 257 AVGLIGQLGVAL---PKETGRMAMVVVATLPIAILYPFFQRYFVKGLTIGGVKE 307 >BH1066 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 99/283 (34%), Positives = 147/283 (51%), Gaps = 10/283 (3%) Query: 28 FAGIFAFLCXXXXXXXXXXSFTDEGTLARDGYSLFPAKWSLAAYRYVFESGDMLLRSYXX 87 F +FA LC S + G A + P ++L AY + D +RS+ Sbjct: 19 FLLLFAVLCILPLVHIFAVSLSGSGAAAANLVMFLPVDFTLDAYERTI-ANDNFIRSFLI 77 Query: 88 XXXXXXXXXXXXXXXXXXYAYAISR--KSFRYRNXXXXXXXXTMLFNGGLVPTYIIVTQF 145 AYA+S+ + F+ R TMLFNGGLVPTY++VT Sbjct: 78 SVVRVVLGTVISMGAMLCAAYALSKEDRDFKGRKFYIWFFVITMLFNGGLVPTYMVVTG- 136 Query: 146 LGLKDTIWALVMPLAVNAFYIMILRTFYSTSVPDALIESGKIDGAGEFRIFXXXXXXXXX 205 LGL +TIWALV+P A+NAF +++L F+ T+VP +L ES IDGA F+IF Sbjct: 137 LGLTNTIWALVLPPAINAFNLILLLNFFRTAVPKSLEESAFIDGANHFQIFLKIYLPISV 196 Query: 206 XXXATIALFSTLGYWNDWFNALLYIDDPNLVPLQSMLMRIETSMQFIMQXXXXXXXXXEA 265 AT++LF+ + +WN WF+ ++Y +D PLQ+ L I ++Q E Sbjct: 197 PAIATVSLFTMVFHWNSWFDGMIYNNDARNYPLQTFLQTI------VVQQDFSQITDAET 250 Query: 266 LRSMPQDTSRMAMVVLATGPIIFAYPFFQRYFIQGLTVGAVKE 308 LR++ Q T + A + +A P++ YPF Q+YF++G+ +GA KE Sbjct: 251 LRNLSQRTVQAAQIFIAALPMLIVYPFIQKYFVKGIVLGAEKE 293 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.140 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,531,000 Number of extensions: 510830 Number of successful extensions: 1180 Number of sequences better than 1.0e-05: 69 Number of HSP's gapped: 1129 Number of HSP's successfully gapped: 69 Length of query: 308 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 202 Effective length of database: 26,153,027 Effective search space: 5282911454 Effective search space used: 5282911454 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 116 (49.3 bits)