BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0078.0001.p (138 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value all5282 [G] COG0395 ABC-type sugar transport system, permease co... 130 7e-31 SMb20233 [G] COG0395 ABC-type sugar transport system, permease c... 128 2e-30 Rv2039c [G] COG0395 ABC-type sugar transport system, permease co... 127 5e-30 MT2099 [G] COG0395 ABC-type sugar transport system, permease com... 127 6e-30 lin1843 [G] COG0395 ABC-type sugar transport system, permease co... 126 1e-29 >all5282 [G] COG0395 ABC-type sugar transport system, permease component Length = 275 Score = 130 bits (326), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 62/129 (48%), Positives = 83/129 (64%) Query: 9 CAGGAFNIFLLRQFYLSIPRDLDEAAYVDGASHWRIFISIIIPLTRPALVVVGLFTFLAS 68 A F IFLLRQ++ +IP +L+EAA +DGA+ +I +++PL RPALV + LFTF+A Sbjct: 146 TAVNGFGIFLLRQYFQTIPVELEEAATIDGANRLQILWQVMLPLARPALVTLFLFTFIAE 205 Query: 69 WNDFLGPLVYLNSESKYTLALGLQQFKGMYAAEWHLMMAAATVVLAPAIVVFFIGQRYFI 128 WND PLV+ T+ L L +F+ + W LMMAA T+ P +V+F IGQR FI Sbjct: 206 WNDLFKPLVFTTKPELRTVQLALAEFQEQFTNNWPLMMAAVTIATVPVMVLFLIGQRQFI 265 Query: 129 EGITLTGIK 137 GI TGIK Sbjct: 266 RGIATTGIK 274 >SMb20233 [G] COG0395 ABC-type sugar transport system, permease component Length = 282 Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 56/126 (44%), Positives = 88/126 (69%) Query: 12 GAFNIFLLRQFYLSIPRDLDEAAYVDGASHWRIFISIIIPLTRPALVVVGLFTFLASWND 71 AF IFLLRQ+YLS+P++++EAA +DGA +WRI+ S+I+PL+RP + + + FLA+WN Sbjct: 157 NAFGIFLLRQYYLSLPKEIEEAARIDGAGYWRIYWSVILPLSRPIMSALAILFFLANWNS 216 Query: 72 FLGPLVYLNSESKYTLALGLQQFKGMYAAEWHLMMAAATVVLAPAIVVFFIGQRYFIEGI 131 FL PL + + + LG+ FK Y+A W+ MMAA+T+V P +++F I QR ++ + Sbjct: 217 FLWPLTITSDPDLWVVQLGIANFKSQYSASWNYMMAASTIVAIPTLILFVIFQRQIMDSL 276 Query: 132 TLTGIK 137 +G+K Sbjct: 277 KTSGLK 282 >Rv2039c [G] COG0395 ABC-type sugar transport system, permease component Length = 280 Score = 127 bits (319), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 56/129 (43%), Positives = 91/129 (70%) Query: 8 GCAGGAFNIFLLRQFYLSIPRDLDEAAYVDGASHWRIFISIIIPLTRPALVVVGLFTFLA 67 G G AF +L+RQF+ ++P DL+EAA +DG S W+I+ I++P +RPA++V+G+ T++ Sbjct: 150 GLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHSRPAVLVLGVLTWVN 209 Query: 68 SWNDFLGPLVYLNSESKYTLALGLQQFKGMYAAEWHLMMAAATVVLAPAIVVFFIGQRYF 127 WNDFL PL+ + S TL LGL + +G Y A W ++MAA+ ++L P ++++ + QR F Sbjct: 210 VWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAASMLMLVPLVILYAVAQRSF 269 Query: 128 IEGITLTGI 136 + GI +TG+ Sbjct: 270 VRGIAVTGL 278 >MT2099 [G] COG0395 ABC-type sugar transport system, permease component Length = 280 Score = 127 bits (319), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 56/129 (43%), Positives = 91/129 (70%) Query: 8 GCAGGAFNIFLLRQFYLSIPRDLDEAAYVDGASHWRIFISIIIPLTRPALVVVGLFTFLA 67 G G AF +L+RQF+ ++P DL+EAA +DG S W+I+ I++P +RPA++V+G+ T++ Sbjct: 150 GLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHSRPAVLVLGVLTWVN 209 Query: 68 SWNDFLGPLVYLNSESKYTLALGLQQFKGMYAAEWHLMMAAATVVLAPAIVVFFIGQRYF 127 WNDFL PL+ + S TL LGL + +G Y A W ++MAA+ ++L P ++++ + QR F Sbjct: 210 VWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAASMLMLVPLVILYAVAQRSF 269 Query: 128 IEGITLTGI 136 + GI +TG+ Sbjct: 270 VRGIAVTGL 278 >lin1843 [G] COG0395 ABC-type sugar transport system, permease component Length = 276 Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 62/126 (49%), Positives = 85/126 (67%) Query: 12 GAFNIFLLRQFYLSIPRDLDEAAYVDGASHWRIFISIIIPLTRPALVVVGLFTFLASWND 71 GAF IFL RQF +I DL EAA +DGAS + IF I+IP++RP L V G+ TF+A WN Sbjct: 151 GAFGIFLFRQFMSTISDDLLEAARLDGASEFYIFWRIVIPISRPVLAVQGILTFIAGWNS 210 Query: 72 FLGPLVYLNSESKYTLALGLQQFKGMYAAEWHLMMAAATVVLAPAIVVFFIGQRYFIEGI 131 FL PL+ N E YTL++GLQ KG Y + + L MA AT ++ P I++F Q+Y ++G Sbjct: 211 FLWPLIIANDEKFYTLSVGLQLLKGQYGSNYALQMAGATFMVIPIILIFMTFQKYILKGF 270 Query: 132 TLTGIK 137 ++G+K Sbjct: 271 NVSGMK 276 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.330 0.144 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 10,056,293 Number of extensions: 385077 Number of successful extensions: 1517 Number of sequences better than 1.0e-05: 150 Number of HSP's gapped: 1453 Number of HSP's successfully gapped: 150 Length of query: 138 Length of database: 38,378,431 Length adjustment: 95 Effective length of query: 43 Effective length of database: 27,421,701 Effective search space: 1179133143 Effective search space used: 1179133143 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 110 (47.0 bits)