BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0073.0012.p (300 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP1797 [G] COG0395 ABC-type sugar transport system, permease com... 157 3e-38 BS_lplC [G] COG0395 ABC-type sugar transport system, permease co... 154 2e-37 BS_ytcP [G] COG0395 ABC-type sugar transport system, permease co... 151 1e-36 BH0481 [G] COG0395 ABC-type sugar transport system, permease com... 151 1e-36 SP0091 [G] COG0395 ABC-type sugar transport system, permease com... 141 1e-33 >SP1797 [G] COG0395 ABC-type sugar transport system, permease component Length = 305 Score = 157 bits (396), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 85/266 (31%), Positives = 142/266 (53%), Gaps = 2/266 (0%) Query: 34 PFLNVLAISFNDSTDSIKGGITVYPRVFTVKNYETIFAYSGLMTGLKXXXXXXXXXXXXX 93 P L ++ SF D + GI+ P +TV+ Y+ +F+ ++ G Sbjct: 41 PLLYIVVASFMDPKVLVSRGISFNPADWTVEGYQRVFSDQSILRGFINSLLYSFGFAALT 100 Query: 94 XVSASMLAFTLSRVDFQARRFVSTFLALTMYISGGLIPVYILIKNLNMMGTFGVYVLPGL 153 + + A+ LS+ D RR+++ FL +TM+ GGL+P Y+L+K L M+ T ++PG Sbjct: 101 VLLSVFTAYPLSKKDLVGRRWINYFLIVTMFFGGGLVPTYLLVKELGMLNTPWAIIVPGA 160 Query: 154 VSAFNVFVIRSFIDGLPYALQESAKLDGANDFTIYWRVILPLTKPALATIALFLAVGQWN 213 V+ +N+ + R++ GLP L E+A +DGAND I+++++LPL KP + + L+ VGQWN Sbjct: 161 VNVWNIILARAYFQGLPEELVEAAVIDGANDLQIFFKIMLPLAKPIMFVLFLYAFVGQWN 220 Query: 214 AWFDTYLYNGSKDGLTTLQFELMKVIQSTTTNADNFRGRNMTEVMAQISPESVKMAXXXX 273 ++FD +Y + L LQ L K++ + D + M +++ E +K A Sbjct: 221 SYFDAMIYIKDPN-LEPLQLVLRKILIQSQPGQDMIGAQAAMNEMKRLA-ELIKYATIVI 278 Query: 274 XXXXXXXXYPFLQRYFVKGMTLGSVK 299 YPF Q+YF KG+ GS+K Sbjct: 279 SSLPLIVMYPFFQKYFDKGIMAGSLK 304 >BS_lplC [G] COG0395 ABC-type sugar transport system, permease component Length = 295 Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 85/291 (29%), Positives = 146/291 (50%), Gaps = 11/291 (3%) Query: 12 SDRIFDXXXXXXXXXXXXXXXXPFLNVLAISFNDSTDSIKGGITVYPRVFTVKNYETIFA 71 + R+FD PFL ++A SF + + ++P+ FT+ Y+ +F+ Sbjct: 12 AGRVFDVCNILFLGGVGAITILPFLYIIAGSFATEAELAQRSFFIFPKTFTLDAYKYVFS 71 Query: 72 YSGLMTGLKXXXXXXXXXXXXXXVSASMLAFTLSRVDFQARRFVSTFLALTMYISGGLIP 131 + + +A+ L++ + R + + +M SGG+IP Sbjct: 72 TPTFLRSMGVSIFITVVGTAVQLFFTFTMAYPLAKRHVKGRNLLLNLVIFSMLFSGGMIP 131 Query: 132 VYILIKNLNMMGTFGVYVLPGLVSAFNVFVIRSFIDGLPYALQESAKLDGANDFTIYWRV 191 Y+++K+L ++ T+ +LP ++ FN+ +I++F LP L+ESAK+DG ++ ++WR+ Sbjct: 132 TYLVVKSLGLLDTYWALILPMAINPFNLIIIKNFFQQLPRELEESAKIDGCSEIGVFWRI 191 Query: 192 ILPLTKPALATIALFLAVGQWNAWFDTYLY--NGSKDGLTTLQFELMKVIQSTTTNADNF 249 LPL+KP +AT ALF AVG WN +F LY + +K L + ++ + T TN D Sbjct: 192 ALPLSKPVIATFALFYAVGIWNDFFHALLYINDSAKWPLQMVLRQVTILSDLTATNGDTM 251 Query: 250 RGRNMTEVMAQISPES-VKMAXXXXXXXXXXXXYPFLQRYFVKGMTLGSVK 299 + + PE +K+A YPFLQ++F KGM +GSVK Sbjct: 252 QN--------AVPPEQGIKLAVIVIATLPILAVYPFLQKHFAKGMLIGSVK 294 >BS_ytcP [G] COG0395 ABC-type sugar transport system, permease component Length = 286 Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 88/291 (30%), Positives = 153/291 (52%), Gaps = 12/291 (4%) Query: 13 DRIFDXXXXXXXXXXXXXXXXPFLNVLAISFNDSTDSIKGGITVYPRVFTVKNYETIFAY 72 +R+FD PF++V+A SF + + + P F++ Y IF+ Sbjct: 3 NRLFDMLIYGFLLMFALICVLPFIHVIAASFATVEEVVSKKFILIPTTFSLDAYRYIFST 62 Query: 73 SGLMTGLKXXXXXXXXXXXXXXVSASMLAFTLSRVDFQARRFVSTFLALTMYISGGLIPV 132 + L +S++A+ LSR D R+ + + TM SGG+IP Sbjct: 63 DIIYKSLLVSVFVTVIGTAVSMFLSSLMAYGLSRRDLIGRQPLMFLVVFTMLFSGGMIPT 122 Query: 133 YILIKNLNMMGTFGVYVLPGLVSAFNVFVIRSFIDGLPYALQESAKLDGANDFTIYWRVI 192 ++++K+L ++ ++ +LP ++AFN+ ++++F +P +L+ESAK+DG ND I+++++ Sbjct: 123 FLVVKSLGLLDSYWALILPTAINAFNLIILKNFFQNIPSSLEESAKIDGCNDLGIFFKIV 182 Query: 193 LPLTKPALATIALFLAVGQWNAWFDTYLY--NGSKDGLTTLQFELMKVIQSTTTNADNFR 250 LPL+ PA+ATI+LF AV WN + LY + +K + L ++ VI S+ D Sbjct: 183 LPLSLPAIATISLFYAVTYWNTYMTAILYLNDSAKWPIQVLLRQI--VIVSSGMQGD--- 237 Query: 251 GRNMTEVMAQISP--ESVKMAXXXXXXXXXXXXYPFLQRYFVKGMTLGSVK 299 M+E+ + P +++KMA YPF+Q++F KG LGSVK Sbjct: 238 ---MSEMGSGSPPPEQTIKMAVIVVATIPVLLVYPFIQKHFAKGALLGSVK 285 >BH0481 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 89/294 (30%), Positives = 153/294 (52%), Gaps = 11/294 (3%) Query: 10 SWSDRIFDXXXXXXXXXXXXXXXXPFLNVLAISFNDSTDSIKGGITVYPRVFTVKNYETI 69 S R+F+ PF++++A SF + ++ ++P F++ Y I Sbjct: 6 SLGSRVFNIFNYLFLFLFSMICFLPFVHIVAGSFASVEEVLQKRFILFPTTFSLDAYRYI 65 Query: 70 FAYSGLMTGLKXXXXXXXXXXXXXXVSASMLAFTLSRVDFQARRFVSTFLALTMYISGGL 129 F+ + L S++A+ LSR D RR + + TM SGG+ Sbjct: 66 FSTDIIFRSLIISILVTVVGTGFSMFLTSLMAYGLSRKDLDGRRVLMFLVVFTMLFSGGM 125 Query: 130 IPVYILIKNLNMMGTFGVYVLPGLVSAFNVFVIRSFIDGLPYALQESAKLDGANDFTIYW 189 IP ++++++L ++ T+ ++P ++AFN+ ++++F +P +L+ESAK+DG ND I++ Sbjct: 126 IPTFLVVRSLGLLDTYWALIIPTAINAFNLIILKNFFQNIPESLEESAKIDGCNDVGIFF 185 Query: 190 RVILPLTKPALATIALFLAVGQWNAWFDTYLYNGSKDGLTTLQFELMK-VIQSTTTNADN 248 R++ PL+ PA+ATI+LF AV WN + LY + + +Q L + VI S+ D Sbjct: 186 RIVFPLSMPAIATISLFYAVTYWNTFMQAILYL-NDSSMWPIQVLLRQIVIMSSGMQGD- 243 Query: 249 FRGRNMTEVMAQ--ISPE-SVKMAXXXXXXXXXXXXYPFLQRYFVKGMTLGSVK 299 +TE+ A + PE ++KMA YPF+Q++F KG LGSVK Sbjct: 244 -----LTELGAGFVMPPEQTIKMAVIVVATIPVLIVYPFIQKHFAKGALLGSVK 292 >SP0091 [G] COG0395 ABC-type sugar transport system, permease component Length = 307 Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 88/272 (32%), Positives = 144/272 (52%), Gaps = 10/272 (3%) Query: 34 PFLNVLAISFNDSTDSIKGGITVYPRVFTVKNYETIFAYSG-LMTGLKXXXXXXXXXXXX 92 PF+ V+ IS D ++ G + +P F + +E + + ++ L Sbjct: 41 PFVFVIIISVTDEKSLLQYGYSFFPSQFGLDGFEFLAQFKDKILQALFISVFVTVVGTLT 100 Query: 93 XXVSASMLAFTLSRVDFQARRFVSTFLALTMYISGGLIPVYILIKNLNMMG-TFGVYVLP 151 + A+ +SR F+ RRF + F+ L+M + GL+P YI++ + +G T ++P Sbjct: 101 NVFITTTYAYAISRTTFKYRRFFTIFVLLSMLFNAGLVPGYIMVTRVLQLGDTVWALIVP 160 Query: 152 GLVSAFNVFVIRSFIDG-LPYALQESAKLDGANDFTIYWRVILPLTKPALATIALFLAVG 210 L+S FN+ ++RSF +P A+ ESA++DGA++ I++++ LPL+ P +ATI L A+G Sbjct: 161 MLLSPFNIILMRSFFKKTIPEAILESARIDGASEARIFFQICLPLSLPGIATITLLTALG 220 Query: 211 QWNAWFDTYLYNGSKDGLTTLQFELMKVIQST--TTNADNFRGRNMTEVMAQISPESVKM 268 WN WF+ LY S D L LQ+ LM++ Q+ A G ++ + E+ +M Sbjct: 221 FWNDWFNALLYIKS-DNLYPLQYLLMQIQQNMDYIAKAVGLIG----QLGVALPKETGRM 275 Query: 269 AXXXXXXXXXXXXYPFLQRYFVKGMTLGSVKS 300 A YPF QRYFVKG+T+G VK Sbjct: 276 AMVVVATLPIAILYPFFQRYFVKGLTIGGVKE 307 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.325 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,786,174 Number of extensions: 548639 Number of successful extensions: 1883 Number of sequences better than 1.0e-05: 126 Number of HSP's gapped: 1821 Number of HSP's successfully gapped: 126 Length of query: 300 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 194 Effective length of database: 26,153,027 Effective search space: 5073687238 Effective search space used: 5073687238 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 115 (48.9 bits)