BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0073.0011.p
         (583 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SP1796 [G] COG1653 ABC-type sugar transport system, periplasmic ...    58   5e-08

>SP1796 [G] COG1653 ABC-type sugar transport system, periplasmic component
          Length = 538

 Score = 57.8 bits (138), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 150/366 (40%), Gaps = 53/366 (14%)

Query: 63  SPLTLSFFAEDPNPNWNNMKDDISKVITEKTGVTLDAEFAVGDPQQKIALIAAGGEYPDI 122
           SPL+     +DPN         I + + ++TGV +D      D  +K  L  + G+ PD 
Sbjct: 56  SPLS----PKDPNEKL------ILQRLEKETGVHIDWTNYQSDFAEKRNLDISSGDLPDA 105

Query: 123 I----SAKADIGKLVDAGAVIDLTELIDKYAPNIKRVLGDNLA-RAKYTNEDQSIYAIPT 177
           I    ++  D+      G +I + +LIDKY PN+K++L +    +A  T  D  IY+ P 
Sbjct: 106 IHNDGASDVDLMNWAKKGVIIPVEDLIDKYMPNLKKILDEKPEYKALMTAPDGHIYSFPW 165

Query: 178 WAAMNEKKFVAGGGFELQHRV----------VKEAGYPEIRTVADYEKVIKDYLEKHPTD 227
              +       G G E  H V          +K+ G    +T  D  KV++ +    P  
Sbjct: 166 IEEL-------GDGKESIHSVNDMAWINKDWLKKLGLEMPKTTDDLIKVLEAFKNGDPNG 218

Query: 228 ENGNKNIGLSL---NADDWHMYISVTNPAVATTGGSDDGEYYINQETHEAMYHFRRPEEK 284
                 I  S    N ++   ++       A  G  D+ ++ +     +  +       K
Sbjct: 219 NGEADEIPFSFISGNGNEDFKFL------FAAFGIGDNDDHLVVGNDGKVDFTADNDNYK 272

Query: 285 EYFRWLNHMNDIGLLDKESFVQKYDQYKAKVATGRVLGLIDQDWDYNDAQQALKTAGKFD 344
           E  +++  + + GL+DKE+F   ++ Y AK    +  G+    WD N+   +       +
Sbjct: 273 EGVKFIRQLQEKGLIDKEAFEHDWNSYIAK-GHDQKFGVYFT-WDKNNVTGS-------N 323

Query: 345 QTYGHYPVTLTKEYKETSFWPTGFMGGY--GISISSTNPDPVRTIKFLDYLASDEGQILN 402
           ++Y   PV L     +     T  MG     + I+S N +   T K++D   +    + N
Sbjct: 324 ESYDVLPV-LAGPSGQKHVARTNGMGFARDKMVITSVNKNLELTAKWIDAQYAPLQSVQN 382

Query: 403 NWGIEG 408
           NWG  G
Sbjct: 383 NWGTYG 388


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.314    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 44,690,223
Number of extensions: 2037574
Number of successful extensions: 4541
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4539
Number of HSP's successfully gapped: 3
Length of query: 583
Length of database: 38,378,431
Length adjustment: 112
Effective length of query: 471
Effective length of database: 25,461,023
Effective search space: 11992141833
Effective search space used: 11992141833
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 119 (50.4 bits)