BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0073.0006.p (452 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yesO [G] COG1653 ABC-type sugar transport system, periplasmic... 171 2e-42 BH1117 [G] COG1653 ABC-type sugar transport system, periplasmic ... 158 2e-38 YPO1719 [G] COG1653 ABC-type sugar transport system, periplasmic... 125 2e-28 lin0220 [G] COG1653 ABC-type sugar transport system, periplasmic... 73 1e-12 mll0854 [G] COG1653 ABC-type sugar transport system, periplasmic... 62 1e-09 >BS_yesO [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 412 Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 114/397 (28%), Positives = 186/397 (46%), Gaps = 17/397 (4%) Query: 61 EPVTLTVAWWGSQARHDATLKALDQYKALNPNVTFQTQFSGWDGYFDKLAVQYSAKSAPD 120 E VTL +AWWG Q RHD T K ++ Y+ NP+V + +F+ WD Y+ KLA +A PD Sbjct: 16 EDVTLRIAWWGGQPRHDYTTKVIELYEKKNPHVHIEAEFANWDDYWKKLAPMSAAGQLPD 75 Query: 121 IIQMDAAYLNDYAGRGLLADLKE------VNVENIEATTMDGGKVNGTQYAVPLGVAALG 174 +IQMD AYL Y + L DL ++V +I+ + GGK++ Y LGV L Sbjct: 76 VIQMDTAYLAQYGKKNQLEDLTPYTKDGTIDVSSIDENMLSGGKIDNKLYGFTLGVNVLS 135 Query: 175 MVYDKTVVEKLGLEAPKFGWTWDDYYAFGEAAKAKLGEDKYVFADQSADLVDYTAYQYSM 234 ++ ++ +++K G+ + WTW+DY + K G V+ D Y Sbjct: 136 VIANEDLLKKAGVSINQENWTWEDYEKLAYDLQEKAG----VYGSNGMHPPDIFFPYYLR 191 Query: 235 GKGYIF---DAEGNLSVDKDTWIGFMTKMDELRKKGILTPADITTTDKELDPQLDSVING 291 KG F D G D ++ + + L K D + K ++ D ++ G Sbjct: 192 TKGERFYKEDGTGLAYQDDQLFVDYFERQLRLVKAKTSPTPDESAQIKGMED--DFIVKG 249 Query: 292 NAVVRHLFSNQVGSIEALKPDAFG-YASMPYGTEAGGWLKPGMFWSVNAQSAHQAEAVKF 350 + + +SNQ L Y E LKP M +S+ S H+ EA KF Sbjct: 250 KSAITWNYSNQYLGFARLTDSPLSLYLPPEQMQEKALTLKPSMLFSIPKSSEHKKEAAKF 309 Query: 351 VDWFVNNEEAGKTLGLTRGTPVNSKVVEALTPTFSDADKTSLDFLNQVTPDAQKF-INDP 409 +++FVNNEEA + + RG PV+ KV +A+ P ++ + ++++ + + K +P Sbjct: 310 INFFVNNEEANQLIKGERGVPVSDKVADAIKPKLNEEETNIVEYVETASKNISKADPPEP 369 Query: 410 QGWGNFKNDYKTIVEKLQFGQSTPEEAYAELLKTAEQ 446 G K +++ + + +PE+A K A + Sbjct: 370 VGSAEVIKLLKDTSDQILYQKVSPEKAAKTFRKKANE 406 >BH1117 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 434 Score = 158 bits (400), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 107/404 (26%), Positives = 200/404 (49%), Gaps = 30/404 (7%) Query: 61 EPVTLTVAWWGSQARHDATLKALDQYKALNPNVTFQTQFSGWDGYFDKLAVQYSAKSAPD 120 E V L VAWWG Q RHD T++A++ ++ P++ +F+ WD Y+++L Q + + PD Sbjct: 40 EDVVLRVAWWGGQERHDMTIEAIELFEEKYPHIQVDPEFTSWDNYWERLTTQAAGNNLPD 99 Query: 121 IIQMDAAYLNDYAGRGLLADLKE------VNVENIEATTMDGGKVNGTQYAVPLGVAALG 174 +IQMD + LN+Y+ RGL+ DL+ +N+++++ D +G+ +AV G AL Sbjct: 100 VIQMDNSKLNEYSSRGLVIDLQSLIADGTINLDDVDDVYQDMNVQDGSVWAVSAGSNALA 159 Query: 175 MVYDKTVVEKLGLEAPKFGWTWDDYYAFGEAAKAKLGEDKYVFADQSADLVDYTAYQYSM 234 +Y++ ++E+ G++ G+T++D+Y + K + D Y + +A+ + Y Sbjct: 160 AIYNEEMLEEQGIQLEP-GYTYEDFYEAMQTLKENIDGDFYGYDFGNAEYEMFFVYARQN 218 Query: 235 GKGYIFDAEGNLSVDKDTWIGFMTKMDELRKKGILTPADITTTDKELDPQLDSVINGNAV 294 G+ + + L + T I F+T + ++ G+ P +T L+ + G ++ Sbjct: 219 GESFYNEDGTGLGFENQTLIDFLTFVKQMVDDGVAPPHALT---------LEYIQGGESL 269 Query: 295 VRHLF-------SNQVGSIEALKPDAFGYASMPY--GTEAGGWLKPGMFWSVNAQSAHQA 345 + SN + ++ G +P G G W++P M +S+++ S Q Sbjct: 270 LGDQMAGAAMAASNGIIGLQQSTEHQLGLMLLPSLDGGVHGNWIRPSMSYSISSHSEEQE 329 Query: 346 EAVKFVDWFVNNEEAGKTLGLTRGTPVNSKVVEALTPTFSDADKTSLDFLNQV---TPDA 402 A F+D+ N+ +A + L RG P++SKV E L P + +FL V T A Sbjct: 330 AAALFIDFLTNDLQANEILKAERGVPISSKVREHLAPMVDGPIAKTFEFLELVADYTSPA 389 Query: 403 QKFINDPQGWGNFKNDYKTIVEKLQFGQSTPEEAYAELLKTAEQ 446 P G + + ++E +++ + + EEA + + AEQ Sbjct: 390 DPL--PPPGESEVRGAFLRMIESVKYERLSIEEATEQFRQEAEQ 431 >YPO1719 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 430 Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 99/395 (25%), Positives = 181/395 (45%), Gaps = 32/395 (8%) Query: 63 VTLTVAWWGSQARHDATLKALDQYKALNPNVTFQTQFSGWDGYFDKLAVQYSAKSAPDII 122 V L ++WWG RH TLKAL+++ +PN+ + +++GWDG+ +L Q + + PD++ Sbjct: 28 VNLRMSWWGGNGRHQVTLKALEEFHKQHPNINVKAEYTGWDGHLSRLTTQIAGGTEPDVM 87 Query: 123 QMDAAYLNDYAGRGL----LADLKE-VNVENIEATTMDGGKVNGTQYAVPLGVAALGMVY 177 Q + +L ++ G L ++KE +++ + + VNG +P+ V A + Sbjct: 88 QTNWNWLPIFSKDGTGFFDLNNVKEQLDLAQFDPIELQQTTVNGKLNGIPISVTARIFYF 147 Query: 178 DKTVVEKLGLEAPKFGWTWDDYYAFGEAAKAKLGEDKYVFA----DQSADLVDYTAYQYS 233 + K GLE PK TWD+ G+ K KLG+ Y D A + Y +Y+ Sbjct: 148 NDATWAKAGLEYPK---TWDELLNAGQVFKEKLGDQYYPVVLEHQDTLALIRSYMTQKYN 204 Query: 234 MGKGYIFDAEGNLSVDKDTWIGFMTKMDELRKKGILTPADITTT-DKELDPQLDSVINGN 292 + + +A + + W+ F T ++ ++ + + K ++ ING Sbjct: 205 IPT--VDEANKKFAYTPEQWVEFFTMYKKMVDSHVMPSSKYYASFGKSNMYEMKPWINGE 262 Query: 293 AVVRHLFSNQVG--SIEALKP---DAFGYASMPYGTEAGGWLKPGMFWSVNAQSAHQAEA 347 +++++ + S KP D Y +P +AG + KP S+ + H E+ Sbjct: 263 WAGTYMWNSTITKYSDNLTKPAKLDLGPYPMLPDAKDAGLFFKPAQMLSIGKSTKHPKES 322 Query: 348 VKFVDWFVNNEEAGKTLGLTRGTPVNSKVVEALTP--TFSDADKTSLDFLNQV--TPDAQ 403 +++ +N++E LGL RG P+++ V L D D S+ LN P Sbjct: 323 AMLINFLLNSKEGVDALGLERGVPLSAAAVAQLRANGVIKDED-PSVAGLNMALELPHEM 381 Query: 404 K---FINDPQGWGNFKNDYKTIVEKLQFGQSTPEE 435 K + +DPQ F + ++ + +GQ + EE Sbjct: 382 KTSPYFDDPQIVSLFGD----AIQYIDYGQKSVEE 412 >lin0220 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 418 Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 100/410 (24%), Positives = 167/410 (40%), Gaps = 63/410 (15%) Query: 65 LTVAWWGSQARHDATLKALDQYKALNPNVTFQTQFSGWDGYFDKLAVQYSAKSAPDIIQM 124 +T + + A A K + +++ NP++ Q ++ YF KL Q + APD ++ Sbjct: 33 ITYYQFSAPADGKALDKMVKEFEKQNPDIKVNVQTIAFNDYFTKLQTQIAGGDAPDAFEL 92 Query: 125 DAAYLNDYAGRGLLADL-------KEVNVENIEATTMDGGKVNGTQYAVPLGVAALGMVY 177 + YA +G+LADL K+ + + D K +G QY + + + +Y Sbjct: 93 NYETFMQYAEKGVLADLTSYIEKDKDFDPSTLNKQAYDAFKYDGKQYGMVESFSNVVTIY 152 Query: 178 DKTVVEKLGLEAPKFGWTWDDYYAFGEAAKAKL--GEDKYVFADQSADLVDYTAYQYSMG 235 +K + +K G+E P WTW D EAA KL ++K Q + ++ G Sbjct: 153 NKDLFDKAGVEYPTADWTWKD----EEAAAKKLTDAKNKVWGTSQPVTMNEFFKVAAQNG 208 Query: 236 KGYIFDAE-GNLSVDKDTWIGFMTKMDELRKKGILTPADITTTDKELDPQL--DSVINGN 292 G IFD + +++ + +T + +T + + + +L QL D +NG Sbjct: 209 -GSIFDKDMTKTTINSPENVEALTHL-----TNEVTESKVAPSPSDLSGQLPEDLFMNGQ 262 Query: 293 AVVRH----LFSNQVGSIEALKPDAFGYASMPYG--TEAGGWLKPGMFWS----VNAQSA 342 + H LF D F A + EAG K F++ V+ S Sbjct: 263 IAMLHTGIWLF------------DMFQDAPFKWDVQVEAGNKQKATHFFANGIGVSKDSD 310 Query: 343 HQAEAVKFVDWFVNNEEAGKT-------LGLTRGTPVNSKVVEALTPTFSDADKTSLDFL 395 + A KF + N+EA K L T + ++A P +A SL ++ Sbjct: 311 KKEAAFKFASFMSANKEAAKIRIANNWELPATENKEILQPYLDATPPDNREAVFESLQYM 370 Query: 396 NQVTPDAQKFINDPQGWGNFKNDYKTIVEKLQFGQSTPEEAYAELLKTAE 445 V P K W + + EK+ G+STPE+A LK +E Sbjct: 371 --VLPPVVK------DWNKISDYTNSEFEKVLNGESTPEKA----LKNSE 408 >mll0854 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 430 Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 64/293 (21%), Positives = 119/293 (40%), Gaps = 22/293 (7%) Query: 72 SQARHDATLKALDQYKALNPNVTFQTQFSGWDGYFDKLAVQYSAKSAPDIIQMDAAYLND 131 S R + K + +++A NP V + W F+K A PD+++M ++ Sbjct: 40 SPPRTEFLKKQIAEFEAANPGVKVELISLPWGQAFEKFLTMVQAGDTPDVVEMPERWMGL 99 Query: 132 YAGRGLLADLKEVNVENIEATTMD------GGKVNGTQYAVPLGVAALGMVYDKTVVEKL 185 YA L DL + +A T+ G VN TQ+ +P G + ++K + ++ Sbjct: 100 YANNAQLEDLGPYMAKWDDAKTLGERAKQFGSTVNNTQFMIPYGYYVNALFWNKKLFKQA 159 Query: 186 GLEAPKFGWTWDDYYAFGEAAKAKLGEDKYVFADQSADLVDYTAY-QYSMGKGYIFDAEG 244 GL+ P T D++ A + A G+ Y + + GKG F+ +G Sbjct: 160 GLDGPPA--TLDEFVADSKKISAIPGKYGYCLRGGPGAFNGMHMFMNIAQGKGGYFNKDG 217 Query: 245 NLSVDKDTWIGFMTKMDELRKKGILTPADITTTDKELDPQLDSVINGNAVVRHLFSNQ-- 302 +++++ + + + ++ K G L P D + + + G NQ Sbjct: 218 TSTINEEGSVKGLQMLADMYKDG-LAPKDAVSWG------FNETVTGFYSGTCAMLNQDP 270 Query: 303 ---VGSIEALKPDAFGYASMPYGTEAGGWLKPGMF-WSVNAQSAHQAEAVKFV 351 +G + + D F A +P G + G W++ A S H+ +A K + Sbjct: 271 DALLGIADKMSADDFAVAPLPVGPSGKSYPTLGYAGWAMFANSQHKDDAWKLM 323 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.315 0.131 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 31,724,053 Number of extensions: 1432031 Number of successful extensions: 3309 Number of sequences better than 1.0e-05: 14 Number of HSP's gapped: 3303 Number of HSP's successfully gapped: 14 Length of query: 452 Length of database: 38,378,431 Length adjustment: 110 Effective length of query: 342 Effective length of database: 25,691,691 Effective search space: 8786558322 Effective search space used: 8786558322 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 117 (49.7 bits)