BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0073.0003.p (282 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO1721 [G] COG0395 ABC-type sugar transport system, permease co... 257 2e-68 BH1119 [G] COG0395 ABC-type sugar transport system, permease com... 251 8e-67 BS_yesQ [G] COG0395 ABC-type sugar transport system, permease co... 238 1e-62 lin0761 [G] COG0395 ABC-type sugar transport system, permease co... 171 1e-42 ML1425 [G] COG0395 ABC-type sugar transport system, permease com... 168 8e-42 >YPO1721 [G] COG0395 ABC-type sugar transport system, permease component Length = 306 Score = 257 bits (656), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 109/271 (40%), Positives = 195/271 (71%), Gaps = 4/271 (1%) Query: 13 HISLLVVSLIMMYPIFWWLGASLKTNEEM-SSANLFPKIPHWANFSDGWVSVPNFTFAHF 71 +I L++V L+M+YP+ W A+ K N E+ ++ L+P+ P F +GW + + F H+ Sbjct: 39 YIVLIIVGLLMLYPLLWMFSAAFKPNNEIFTTLGLWPEHPTSDGFINGWKTGTEYNFGHY 98 Query: 72 YLNTFELVAGVLFTSVVACSLVAFAFSRLDFPLRNFWFAIMLVTLMLPTQVTIVPQYVMF 131 LNTF+ V + ++++ ++VA+ F+R + P + FWF ++ T++LP+ V ++PQY+MF Sbjct: 99 MLNTFKYVIPKVILTIISSTIVAYGFARFEIPWKKFWFTTLITTMLLPSTVLLIPQYIMF 158 Query: 132 SKWGWINTYLPFYIPHLFAGGIGGPFFIYLLVQFMRSVPKELDEAAKIDGCSWFSIYWRI 191 + G +N+YLP Y+P FA FF+++L+QF+R VP++++EAA+IDGC+ F + W + Sbjct: 159 REMGMLNSYLPLYLPLAFATQ---GFFVFMLIQFLRGVPRDMEEAAQIDGCNSFQVLWYV 215 Query: 192 MLPLVKPALVTVAIYCFLWNWDDFFGQMLYINTIDKYTINLALKLFIDSQGSVPWGQMLA 251 ++P++KPA+++VA++ F+W+ +DF G ++Y+ ++DKY I LALK+ ID PW ++LA Sbjct: 216 VVPILKPAIISVALFQFMWSMNDFIGPLIYVYSVDKYPIALALKMSIDVTEGAPWNEILA 275 Query: 252 MSLVSIVPSVLIFFLAQKHFVEGMSAGALKG 282 M+ +SI+PS+++FFLAQ++FV+G+++ +KG Sbjct: 276 MASISILPSIIVFFLAQRYFVQGVTSSGIKG 306 >BH1119 [G] COG0395 ABC-type sugar transport system, permease component Length = 281 Score = 251 bits (641), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 114/262 (43%), Positives = 175/262 (66%), Gaps = 5/262 (1%) Query: 22 IMMYPIFWWLGASLKTNEEM--SSANLFPKIPHWANFSDGWVSVPNFTFAHFYLNTFELV 79 IM+YPI W + +SLK E+ +++L P W+N+ DGW F ++ N+F + Sbjct: 23 IMVYPILWMVASSLKPASEIFSQASSLIPSEFVWSNYPDGWAGFGRTGFDIYFKNSFIIT 82 Query: 80 AGVLFTSVVACSLVAFAFSRLDFPLRNFWFAIMLVTLMLPTQVTIVPQYVMFSKWGWINT 139 V+ ++++ S+VA+ F+RL F + FA ++ T+MLP Q+T++PQY++F GW+NT Sbjct: 83 TSVVIGAILSSSIVAYGFARLQFKFKKVLFACLIATVMLPVQITLIPQYILFHNLGWVNT 142 Query: 140 YLPFYIPHLFAGGIGGPFFIYLLVQFMRSVPKELDEAAKIDGCSWFSIYWRIMLPLVKPA 199 + P +P G PFFI+LL+QF+R +P+ELDEAA IDGCS F ++WR++LPL+KPA Sbjct: 143 FYPLIVPAFLGGT---PFFIFLLIQFIRGIPRELDEAAIIDGCSTFGVFWRVILPLLKPA 199 Query: 200 LVTVAIYCFLWNWDDFFGQMLYINTIDKYTINLALKLFIDSQGSVPWGQMLAMSLVSIVP 259 LVTVAI+ F+W WDDF ++Y+N D T+ L L+ F+D++ WG +LAMS +S++P Sbjct: 200 LVTVAIFAFMWTWDDFLAPLIYLNKTDIQTVALGLRNFMDAESGTSWGALLAMSTLSLLP 259 Query: 260 SVLIFFLAQKHFVEGMSAGALK 281 +IF Q++ VEG+S LK Sbjct: 260 QFIIFLFFQRYLVEGISTTGLK 281 >BS_yesQ [G] COG0395 ABC-type sugar transport system, permease component Length = 296 Score = 238 bits (606), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 112/278 (40%), Positives = 184/278 (66%), Gaps = 6/278 (2%) Query: 6 SSKRFVTHISLLVVSLIMMYPIFWWLGASLKTNEEM--SSANLFPKIPHWANFSDGWVSV 63 S KR + H+ ++++++YP+ W +S K + + +S +L P +N+++GW + Sbjct: 23 SPKRILFHVFTATLAVLLLYPVIWLFVSSFKESASIFTTSHSLIPDPFILSNYAEGWKGI 82 Query: 64 PNFTFAHFYLNTFELVAGVLFTSVVACSLVAFAFSRLDFPLRNFWFAIMLVTLMLPTQVT 123 F F N+ +V +V++ +++A+ F+R+ F + FWFA M+ TLMLP +V Sbjct: 83 AGQPFLTFIKNSAIIVGLSTIGAVMSSAVIAYGFARIPFKGKKFWFACMMGTLMLPHEVL 142 Query: 124 IVPQYVMFSKWGWINTYLPFYIPHLFAGGIGGPFFIYLLVQFMRSVPKELDEAAKIDGCS 183 ++PQY+MF+K W+N++ P +P F G FFI+L++QF+R++P+ELDEAA+IDGC Sbjct: 143 MIPQYIMFAKLDWLNSFKPIVVPQFF----GHAFFIFLMIQFIRTIPEELDEAARIDGCG 198 Query: 184 WFSIYWRIMLPLVKPALVTVAIYCFLWNWDDFFGQMLYINTIDKYTINLALKLFIDSQGS 243 F+ +WRI+LPL+ PAL T AI+ F W W++ +LY+N + Y ++LALKLF+D++ + Sbjct: 199 RFACFWRIILPLIAPALATSAIFSFYWKWEELIQPLLYLNKPELYPVSLALKLFLDTESA 258 Query: 244 VPWGQMLAMSLVSIVPSVLIFFLAQKHFVEGMSAGALK 281 WG M AMS VS++P +L+FFL QK+ V+G+S LK Sbjct: 259 SNWGAMFAMSAVSLLPVILVFFLFQKYIVQGISTTGLK 296 >lin0761 [G] COG0395 ABC-type sugar transport system, permease component Length = 291 Score = 171 bits (432), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 97/297 (32%), Positives = 166/297 (55%), Gaps = 25/297 (8%) Query: 1 MEATRSSKRFVTHISLLVVSLIMMYPIFWWLGASLKTNEEM--SSANLFPKIPHWANFSD 58 ++ + SK F+ +I++L++SL+ ++P+ W + S K E+ +S NL PK+ W N+ D Sbjct: 4 IKLKKGSKSFIWYIAVLLISLVTVFPLIWTVSTSFKPTSEILSNSMNLIPKMFTWDNYKD 63 Query: 59 GWVSVPNFTFAHFYLNTFELVAGVLFTSVVACSLVAFAFSRLDFPLRNFWFAIMLVTLML 118 + + P FA + +N+ L G + T++ SL +AF++L F + F L ++M+ Sbjct: 64 VFSTTP---FARYLVNSLILAVGGVLTNLFFGSLAGYAFAKLPFKGKKGLFMTFLGSMMI 120 Query: 119 PTQVTIVPQYVMFSKW--------------GWINTYLPFYIPHLFAGGIGGPFFIYLLVQ 164 P VT++P +++ + G+INTY IP G G F I+ + Q Sbjct: 121 PAVVTMIPSFLVLKNFPLMGGNDITGHGGMGFINTYWAILIP-----GAAGAFSIFFMKQ 175 Query: 165 FMRSVPKELDEAAKIDGCSWFSIYWRIMLPLVKPALVTVAIYCFLWNWDDFFGQMLYINT 224 F ++P EL EAA+IDGCS F I+W+I +PL K AL T+ I F W+ F ++ +N+ Sbjct: 176 FFETLPDELSEAARIDGCSEFKIFWKIYMPLAKTALATLGIMTFQAGWNQFMWPLIVLNS 235 Query: 225 IDKYTINLALKLFIDSQGSVPWGQMLAMSLVSIVPSVLIFFLAQKHFVEGMSAGALK 281 T+ + L F ++ S +G ++A ++VS +P + +F AQK+FVEG++ K Sbjct: 236 QKMMTVQVGLASFQYNE-SANYGALMAGTIVSTIPVLFVFIFAQKYFVEGIAHNGGK 291 >ML1425 [G] COG0395 ABC-type sugar transport system, permease component Length = 283 Score = 168 bits (426), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 96/275 (34%), Positives = 152/275 (55%), Gaps = 8/275 (2%) Query: 8 KRFVTHISLLVVSLIMMYPIFWWLGASLKTNEEMSSANLFPKIPHWANFSDGWVSVPNFT 67 + V +I+L ++ ++PI W L SLK E+ L P P W+N+++ + +P Sbjct: 17 RAVVVYIALTGIAWCALFPIVWALSGSLKKEGEIREPTLLPAHPQWSNYTEVFDLIP--- 73 Query: 68 FAHFYLNTFELVAGVLFTSVVACSLVAFAFSRLDFPLRNFWFAIMLVTLMLPTQVTIVPQ 127 F + NT V V CSL +AF+RL F R+ F + L TLM+P VTI+PQ Sbjct: 74 FWRMFFNTVLYAGYVTVGQVFFCSLAGYAFARLQFRGRDALFVLYLGTLMMPLTVTIIPQ 133 Query: 128 YVMFSKWGWINTYLPFYIPHLFAGGIGGPFFIYLLVQFMRSVPKELDEAAKIDGCSWFSI 187 +++ GW +T +P LF G F YL+ QF R++P +L+EAA +DGCS + I Sbjct: 134 FILMRVLGWTDTPWAMIVPGLF----GSAFGTYLMRQFFRTLPSDLEEAAILDGCSPWQI 189 Query: 188 YWRIMLPLVKPALVTVAIYCFLWNWDDFFGQMLYINTIDKYTINLALKLFIDSQGSVPWG 247 YWR++LP KPA+ +A+ ++ W+DF +L I T+ L L G+ W Sbjct: 190 YWRVLLPHAKPAVGVLAVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRMRGEYGTC-WP 248 Query: 248 QMLAMSLVSIVPSVLIFFLAQKHFVEGMSAGALKG 282 ++A S++ I+P V+I+ +AQ+ FV G++ + G Sbjct: 249 VIMATSMLIILPLVIIYTIAQRAFVRGITVTRIGG 283 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.330 0.142 0.471 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,303,832 Number of extensions: 759385 Number of successful extensions: 3011 Number of sequences better than 1.0e-05: 176 Number of HSP's gapped: 2741 Number of HSP's successfully gapped: 176 Length of query: 282 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 177 Effective length of database: 26,268,361 Effective search space: 4649499897 Effective search space used: 4649499897 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 115 (48.9 bits)