BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0073.0002.p (352 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1118 [G] COG1175 ABC-type sugar transport systems, permease co... 325 7e-89 BS_yesP [G] COG1175 ABC-type sugar transport systems, permease c... 282 5e-76 YPO1722 [G] COG1175 ABC-type sugar transport systems, permease c... 272 5e-73 BH1865 [G] COG1175 ABC-type sugar transport systems, permease co... 199 6e-51 lin0218 [G] COG1175 ABC-type sugar transport systems, permease c... 191 2e-48 >BH1118 [G] COG1175 ABC-type sugar transport systems, permease components Length = 318 Score = 325 bits (833), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 164/319 (51%), Positives = 207/319 (64%), Gaps = 1/319 (0%) Query: 34 MNNAAVKQAPAGSLKTVPSSKKRAKRWESPLAGYLFLSPWLIGFFLLTLGPMIMSLYYSF 93 M +AA A L + ++R K+W+ GY +SPWL+GFF L +GPMI SLY+SF Sbjct: 1 MRDAAKVNREAIELYDSKTRQER-KKWKESFVGYAMISPWLLGFFGLVIGPMIASLYFSF 59 Query: 94 TDYSLLTAPKWTGLANYTRIFTEDDIFPSSLRITITFVLLTVPLRLMFALGIAMLLNRKI 153 TDY +L++ W GL NY IFT D F SL++T+ FV + PL+L FAL +AML N Sbjct: 60 TDYDMLSSANWVGLQNYIHIFTSDPRFVQSLKVTLIFVFVPTPLKLAFALFLAMLFNTGR 119 Query: 154 KGISFYRTMVYFPSLIGTSIAVSILWKNIFSRNGFINDFLAIFGIKGPAWIADPKYALGT 213 KG + T+ Y PS+IG S+AV+++WK +F G +N FL +FG G WI YAL Sbjct: 120 KGSGLFSTIYYIPSIIGGSVAVAVVWKQLFGSRGAVNSFLELFGFSGVNWIGSTDYALSI 179 Query: 214 LILLMVWQFGSSMIIFLAGLKQIPGDLYEASSVDGAGKFRQFFSITLPMLSPIIMFNAIQ 273 LILL+VWQFGS MIIFLAGL+QIP +LYEA+SVDGA FR+FFSITLPML+P+I FN I Sbjct: 180 LILLVVWQFGSPMIIFLAGLRQIPQELYEAASVDGANSFRKFFSITLPMLTPVIFFNLIM 239 Query: 274 TMINTFQMFTQAFVITGGGPVKSTFVYVMYLYEEAFTKFHMGYXXXXXXXXXXXXXXFTA 333 I F FTQA++ITGGGP+ ST Y +YLYE AF MGY T Sbjct: 240 QTIGGFMTFTQAYLITGGGPLDSTLFYAVYLYEVAFEYLRMGYASAMAWILLVIIGGITF 299 Query: 334 VLFGTSKYWVFYESQGGKK 352 V F +S YWV YES+GG+ Sbjct: 300 VFFKSSSYWVHYESEGGRS 318 >BS_yesP [G] COG1175 ABC-type sugar transport systems, permease components Length = 309 Score = 282 bits (722), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 151/298 (50%), Positives = 195/298 (65%), Gaps = 4/298 (1%) Query: 54 KKRAKRWESPLAGYLFLSPWLIGFFLLTLGPMIMSLYYSFTDYSLLTAPKWTGLANYTRI 113 K R+ R + LAGY F+SP++IGF T+ PM SL+ SFT Y L TAPKW GL N+ + Sbjct: 11 KSRSIR-KDNLAGYAFISPFIIGFLCFTVIPMGASLFLSFTSYDLFTAPKWIGLDNFKEM 69 Query: 114 FTEDDIFPSSLRITITFVLLTVPLRLMFALGIAMLLNRKIKGISFYRTMVYFPSLIGTSI 173 FT D+ + SL++T T+VL VPLRL FAL IA++LN KG + YRT+ Y PS+IG S+ Sbjct: 70 FTGDEKYWQSLKVTFTYVLAGVPLRLGFALFIAVILNNAAKGTAIYRTLFYLPSIIGGSV 129 Query: 174 AVSILWKNIFSRNGFINDFLAIFGIKGPA-WIADPKYALGTLILLMVWQFGSSMIIFLAG 232 AV+I+W+NIF +G IN L GI W +P AL TLILL VWQFGSSM+IFLAG Sbjct: 130 AVAIMWRNIFGNDGVINALLFFVGIDQKILWYQNPTSALWTLILLSVWQFGSSMLIFLAG 189 Query: 233 LKQIPGDLYEASSVDGAGKFRQFFSITLPMLSPIIMFNAIQTMINTFQMFTQAFVIT--G 290 LK IP EA+SVDGA + ++FF ITLP+L+PII FN + I+ F FT A++I+ Sbjct: 190 LKNIPSSYLEAASVDGANRVQRFFKITLPILTPIIFFNLVMQTISAFMTFTPAYIISKGE 249 Query: 291 GGPVKSTFVYVMYLYEEAFTKFHMGYXXXXXXXXXXXXXXFTAVLFGTSKYWVFYESQ 348 GGP+ T +Y +YL++ AF F MGY T +LF TS YWV YES+ Sbjct: 250 GGPLDGTLLYSLYLFQRAFNYFQMGYASAMAWVMLVIVGLITLILFKTSSYWVHYESK 307 >YPO1722 [G] COG1175 ABC-type sugar transport systems, permease components Length = 296 Score = 272 bits (696), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 124/292 (42%), Positives = 193/292 (66%) Query: 61 ESPLAGYLFLSPWLIGFFLLTLGPMIMSLYYSFTDYSLLTAPKWTGLANYTRIFTEDDIF 120 E+ + G ++SP++IG + T P + S + SFT+Y L++ P + G+ NY + TEDD+F Sbjct: 3 ENRMLGLAYISPYIIGLIIFTAFPFVSSFFLSFTEYDLMSPPVYNGIENYRYMLTEDDLF 62 Query: 121 PSSLRITITFVLLTVPLRLMFALGIAMLLNRKIKGISFYRTMVYFPSLIGTSIAVSILWK 180 S+ +T +V LT+PL+L FALGIA +LN K++GI F+RT Y PS++G+S+A+++LW+ Sbjct: 63 WKSMGVTFAYVFLTIPLKLAFALGIAFVLNFKLRGIGFFRTAFYIPSILGSSVAIAVLWR 122 Query: 181 NIFSRNGFINDFLAIFGIKGPAWIADPKYALGTLILLMVWQFGSSMIIFLAGLKQIPGDL 240 +F+ +G +N F+ +FG + W+ +P AL ++ LL VWQFGS+M+IFLA L+ +P Sbjct: 123 ALFAIDGLLNSFIGVFGFEAINWLGEPSLALTSVTLLRVWQFGSAMVIFLAALQNVPQSQ 182 Query: 241 YEASSVDGAGKFRQFFSITLPMLSPIIMFNAIQTMINTFQMFTQAFVITGGGPVKSTFVY 300 YEA+ +DGA K++ F +T+P+++P+I FN I FQ FT +VITGGGP T+++ Sbjct: 183 YEAAMIDGASKWQMFMKVTVPLITPVIFFNFIMQTTQAFQEFTAPYVITGGGPTHYTYLF 242 Query: 301 VMYLYEEAFTKFHMGYXXXXXXXXXXXXXXFTAVLFGTSKYWVFYESQGGKK 352 +Y+Y+ AF F MGY F ++ F +SKYWVFY + G K Sbjct: 243 SLYIYDTAFKYFDMGYGAALAWVLFLVVALFASIAFKSSKYWVFYSADKGGK 294 >BH1865 [G] COG1175 ABC-type sugar transport systems, permease components Length = 309 Score = 199 bits (506), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 111/300 (37%), Positives = 174/300 (58%), Gaps = 4/300 (1%) Query: 48 KTVPSSKKRAKRWESPLAGYLFLSPWLIGFFLLTLGPMIMSLYYSFTDYSLLTAPKWTGL 107 KT + K++ + + GYLF++P +IGF + LGPM+ S+Y SFTD+ L P WTG Sbjct: 12 KTTKARKQKRRLNKEYFWGYLFIAPPIIGFAIFALGPMLYSIYVSFTDFDLYNEPVWTGA 71 Query: 108 ANYTRIFTEDDIFPSSLRITITFVLLTVPLRLMFALGIAMLLNRKIKGISFYRTMVYFPS 167 NY R+F DD+F ++ T + L +P+ + +LGIA+ LN+K+KGI+ +RT + P+ Sbjct: 72 DNYYRLFVTDDLFRKTVFNTF-YAALGIPIGMAVSLGIAVALNQKVKGIALFRTAFFLPA 130 Query: 168 LIGTSIAVSILWKNIFSRN-GFINDFLAIFGIKGPAWIADPKYALGTLILLMVWQ-FGSS 225 + + +A+++LW+ IF+ + G +N L GI GP W++D K+A+ +I+ VW G + Sbjct: 131 -VSSVVAITLLWRWIFNADFGLLNIMLNYVGIHGPGWLSDEKWAMPAMIIQGVWGGLGIN 189 Query: 226 MIIFLAGLKQIPGDLYEASSVDGAGKFRQFFSITLPMLSPIIMFNAIQTMINTFQMFTQA 285 MI++LA L+ + LYEA+ +DG +++F IT+P +SP F I + I Q F + Sbjct: 190 MILYLAALQGVNPALYEAADIDGGNAWQKFIHITVPSISPTTFFILITSTIGALQDFQRF 249 Query: 286 FVITGGGPVKSTFVYVMYLYEEAFTKFHMGYXXXXXXXXXXXXXXFTAVLFGTSKYWVFY 345 ++T GGP ST V YL+ AF MGY T + F +K WV Y Sbjct: 250 MIMTEGGPNYSTTTVVYYLFLNAFRYMEMGYASAMAWVLGIIILIITIINFKLAKKWVHY 309 >lin0218 [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 106/251 (42%), Positives = 160/251 (63%), Gaps = 4/251 (1%) Query: 68 LFLSPWLIGFFLLTLGPMIMSLYYSFTDYSLLTAPKWTGLANYTRIFTEDDIFPSSLRIT 127 +FL P L+GF + P++ SL SFTD+ L++ +TG NY R+F + + F S R T Sbjct: 15 IFLLPNLLGFLIFIAIPILGSLGISFTDWDLVSTIHFTGFENYKRLFNDPE-FWKSFRNT 73 Query: 128 ITFVLLTVPLRLMFALGIAMLLNRKIKGISFYRTMVYFPSLIGTSIAVSILWKNIFSRN- 186 ITF++ +P ++ L A++LN+KIK F+R VYF +I + +AVS++WK +F+ + Sbjct: 74 ITFIIGYLPSVMILGLACALMLNQKIKLRPFFRA-VYFLPVITSWVAVSLVWKWLFNPSY 132 Query: 187 GFINDFLAIFGIKGPAWIADPKYALGTLILLMVWQ-FGSSMIIFLAGLKQIPGDLYEASS 245 G IN FL++ GI GP W+ DP+ A+ +I+ W+ G M++FL GL+ I YEA++ Sbjct: 133 GLINYFLSLIGIAGPNWLTDPQTAMIAVIITSAWKDIGFVMVLFLGGLQNISPSYYEAAN 192 Query: 246 VDGAGKFRQFFSITLPMLSPIIMFNAIQTMINTFQMFTQAFVITGGGPVKSTFVYVMYLY 305 +DGA K RQ FSIT+P+L+P F I ++IN+FQ+F Q ++T GGP +T V +Y Sbjct: 193 MDGASKLRQLFSITIPLLTPTTFFVTIISLINSFQVFDQVMIMTEGGPSGATMTLVQNIY 252 Query: 306 EEAFTKFHMGY 316 AF F MGY Sbjct: 253 NHAFRYFEMGY 263 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.141 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 24,173,912 Number of extensions: 883748 Number of successful extensions: 7967 Number of sequences better than 1.0e-05: 178 Number of HSP's gapped: 7706 Number of HSP's successfully gapped: 179 Length of query: 352 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 245 Effective length of database: 26,037,693 Effective search space: 6379234785 Effective search space used: 6379234785 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 116 (49.3 bits)