BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0064.0014.p (209 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM0721 [M] COG0438 Glycosyltransferase 220 1e-57 AGc2164 [E] COG1280 Putative threonine efflux protein 220 1e-57 dksA [T] COG1734 DnaK suppressor protein 208 6e-54 STM4371 [KT] COG1842 Phage shock protein A (IM30), suppresses si... 208 6e-54 BS_ylyA [T] COG1734 DnaK suppressor protein 208 6e-54 >STM0721 [M] COG0438 Glycosyltransferase Length = 377 Score = 220 bits (561), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 18/209 (8%), Positives = 40/209 (19%) Query: 1 MGKLVICDHPLIQHKLTFIRDVRTNTKEFREHVDEVATLMAYEITRDIPLETITVQTPVA 60 M +L + L + E + I + L I + Sbjct: 1 MKRLCYFVNSDWYFDLHWTERAIAARDAGYEIHIISHFIGEEIIKKFKTLGFICHNVSLV 60 Query: 61 ETQSKVISGRMLGLIPILRAGLGMLEGVLKLLPAAKVGHVGLFRDPETLQPVEYYIKLPT 120 + L + + + + R + + + Sbjct: 61 AQSFNMFVFFRAFLNARKIIKEINPDLLHCITLKPCLIGGVSARRSNSPVVISFVGLGRI 120 Query: 121 DVQERELIVIDPMLATGGSAIAAITSLKNRGCTQIKMMNLIXXXXXXXXXXXXHPDVDIY 180 + + I L A K I + Sbjct: 121 FLYNTVPMRILRALTVLVYKYIAGNKRGVFIFEHDKDRRKISRLVGIDYHKTIVIEGAGI 180 Query: 181 VAALDDHLNEHGYIVPGLGDAGDRLYGTK 209 + E + +P + A L+ Sbjct: 181 NPDIYKFSIEKKHEIPIVLFASRMLWSKG 209 >AGc2164 [E] COG1280 Putative threonine efflux protein Length = 218 Score = 220 bits (560), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 15/209 (7%), Positives = 33/209 (15%) Query: 1 MGKLVICDHPLIQHKLTFIRDVRTNTKEFREHVDEVATLMAYEITRDIPLETITVQTPVA 60 M D+P + + + Sbjct: 1 MPCARGRDNPNRIIRSRQSMKQELILASSSASRQMLMRNAGLTFSAIPADIDERALDEQL 60 Query: 61 ETQSKVISGRMLGLIPILRAGLGMLEGVLKLLPAAKVGHVGLFRDPETLQPVEYYIKLPT 120 E L L + L +L + +G + E L + Sbjct: 61 ERDGASPEEVALELARAKALAVSALHPEALVLGCDQTMALGTRVYHKPKNMAEAATHLLS 120 Query: 121 DVQERELIVIDPMLATGGSAIAAITSLKNRGCTQIKMMNLIXXXXXXXXXXXXHPDVDIY 180 + + +L G + S + + Sbjct: 121 LSGKVHRLNSAAVLVHNGKVVWQTVSSAELAVRTLSAEFVSRHLQRVGEKALSSVGAYQL 180 Query: 181 VAALDDHLNEHGYIVPGLGDAGDRLYGTK 209 + +K Sbjct: 181 EREGIQLFTSIEGDYFTILGLPLLPLLSK 209 >dksA [T] COG1734 DnaK suppressor protein Length = 217 Score = 208 bits (529), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 96/207 (46%), Positives = 143/207 (69%) Query: 3 KLVICDHPLIQHKLTFIRDVRTNTKEFREHVDEVATLMAYEITRDIPLETITVQTPVAET 62 K+V HPL++HKL +R+ +TK FRE EV +L+ YE T D+ E +T++ Sbjct: 11 KIVEVKHPLVKHKLGLMREQDISTKRFRELASEVGSLLTYEATADLETEKVTIEGWNGPV 70 Query: 63 QSKVISGRMLGLIPILRAGLGMLEGVLKLLPAAKVGHVGLFRDPETLQPVEYYIKLPTDV 122 + I G+ + ++PILRAGLGM++GVL+ +P+A++ VG++R+ ETL+PV Y+ KL +++ Sbjct: 71 EIDQIKGKKITVVPILRAGLGMMDGVLENVPSARISVVGMYRNEETLEPVPYFQKLVSNI 130 Query: 123 QERELIVIDPMLATGGSAIAAITSLKNRGCTQIKMMNLIXXXXXXXXXXXXHPDVDIYVA 182 ER +++DPMLATGGS IA I LK GC+ IK++ L+ HPDV++Y A Sbjct: 131 DERMALIVDPMLATGGSVIATIDLLKKAGCSSIKVLVLVAAPEGIAALEKAHPDVELYTA 190 Query: 183 ALDDHLNEHGYIVPGLGDAGDRLYGTK 209 ++D LNEHGYI+PGLGDAGD+++GTK Sbjct: 191 SIDQGLNEHGYIIPGLGDAGDKIFGTK 217 >STM4371 [KT] COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription Length = 217 Score = 208 bits (529), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 96/207 (46%), Positives = 143/207 (69%) Query: 3 KLVICDHPLIQHKLTFIRDVRTNTKEFREHVDEVATLMAYEITRDIPLETITVQTPVAET 62 K+V HPL++HKL +R+ +TK FRE EV +L+ YE T D+ E +T++ Sbjct: 11 KIVEVKHPLVKHKLGLMREQDISTKRFRELASEVGSLLTYEATADLETEKVTIEGWNGPV 70 Query: 63 QSKVISGRMLGLIPILRAGLGMLEGVLKLLPAAKVGHVGLFRDPETLQPVEYYIKLPTDV 122 + I G+ + ++PILRAGLGM++GVL+ +P+A++ VG++R+ ETL+PV Y+ KL +++ Sbjct: 71 EIDQIKGKKITVVPILRAGLGMMDGVLENVPSARISVVGMYRNEETLEPVPYFQKLVSNI 130 Query: 123 QERELIVIDPMLATGGSAIAAITSLKNRGCTQIKMMNLIXXXXXXXXXXXXHPDVDIYVA 182 ER +++DPMLATGGS IA I LK GC+ IK++ L+ HPDV++Y A Sbjct: 131 DERMALIVDPMLATGGSVIATIDLLKKAGCSSIKVLVLVAAPEGIAALEKAHPDVELYTA 190 Query: 183 ALDDHLNEHGYIVPGLGDAGDRLYGTK 209 ++D LNEHGYI+PGLGDAGD+++GTK Sbjct: 191 SIDQGLNEHGYIIPGLGDAGDKIFGTK 217 >BS_ylyA [T] COG1734 DnaK suppressor protein Length = 217 Score = 208 bits (529), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 96/207 (46%), Positives = 143/207 (69%) Query: 3 KLVICDHPLIQHKLTFIRDVRTNTKEFREHVDEVATLMAYEITRDIPLETITVQTPVAET 62 K+V HPL++HKL +R+ +TK FRE EV +L+ YE T D+ E +T++ Sbjct: 11 KIVEVKHPLVKHKLGLMREQDISTKRFRELASEVGSLLTYEATADLETEKVTIEGWNGPV 70 Query: 63 QSKVISGRMLGLIPILRAGLGMLEGVLKLLPAAKVGHVGLFRDPETLQPVEYYIKLPTDV 122 + I G+ + ++PILRAGLGM++GVL+ +P+A++ VG++R+ ETL+PV Y+ KL +++ Sbjct: 71 EIDQIKGKKITVVPILRAGLGMMDGVLENVPSARISVVGMYRNEETLEPVPYFQKLVSNI 130 Query: 123 QERELIVIDPMLATGGSAIAAITSLKNRGCTQIKMMNLIXXXXXXXXXXXXHPDVDIYVA 182 ER +++DPMLATGGS IA I LK GC+ IK++ L+ HPDV++Y A Sbjct: 131 DERMALIVDPMLATGGSVIATIDLLKKAGCSSIKVLVLVAAPEGIAALEKAHPDVELYTA 190 Query: 183 ALDDHLNEHGYIVPGLGDAGDRLYGTK 209 ++D LNEHGYI+PGLGDAGD+++GTK Sbjct: 191 SIDQGLNEHGYIIPGLGDAGDKIFGTK 217 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.322 0.141 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 14,698,630 Number of extensions: 534915 Number of successful extensions: 1222 Number of sequences better than 1.0e-05: 62 Number of HSP's gapped: 1215 Number of HSP's successfully gapped: 62 Length of query: 209 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 107 Effective length of database: 26,614,363 Effective search space: 2847736841 Effective search space used: 2847736841 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 113 (48.1 bits)