BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0064.0010.p (278 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM1616 [GT] COG1762 Phosphotransferase system mannitol/fructose... 92 1e-18 aq_1799 [P] COG2897 Rhodanese-related sulfurtransferase 62 9e-10 aq_1792 [KT] COG3604 Transcriptional regulator containing GAF, A... 62 9e-10 aq_1796 [M] COG0741 Soluble lytic murein transglycosylase and re... 62 9e-10 aq_1798 [R] COG0491 Zn-dependent hydrolases, including glyoxylases 62 9e-10 >STM1616 [GT] COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Length = 145 Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 0/276 (0%), Positives = 0/276 (0%), Gaps = 41/276 (14%) Query: 1 MHKSPIIMLGGLHIDLSIVLMLLVTCTIVFVLALLATRNLSVEN-PGKLQNFLEWAIE-F 58 K L I + + T + V Sbjct: 46 TLKWGPYYLIAPGIA---LPHARPEQGANHNQISVTTLSTPVAFGNADCDPIWLLLCASA 102 Query: 59 VQGLISSTMDLKKGKPFLSLGMALIMFLFVGNLLGLPLGIVTDYHDAEHAKVFGKEIVSV 118 + + S ++ + Sbjct: 103 TDAEAHIRTIQRISQWLDSPESVAMLQDAPNDAAL---FAQLT--------------ALR 145 Query: 119 TKELDKLHAEAGTVNTGSHEEAEVGVAWWKSPTADPAVAMGLAVMIFLMTHIVGM-TRNT 177 Sbjct: 146 ----------- 194 Query: 178 KNYFKHYFEPYPFFFPINLIEQVSKLLTHGMRLFGNIFAGEVLISVILKLAALGVGGWIA 237 Sbjct: 195 ---- 250 Query: 238 SVLGLIVWQGFSIFIGTIQAFIFVMLTMVYFSQMLE 273 Sbjct: 251 --- 283 >aq_1799 [P] COG2897 Rhodanese-related sulfurtransferase Length = 216 Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 57/239 (23%), Positives = 102/239 (42%), Gaps = 55/239 (23%) Query: 44 NPGKLQNFLEWAIEFVQGLISSTMDLKKGKPFLSLGMALIMFLFVGNLLGLPLGIVTDYH 103 P K Q LE + FV+ ++ + ++G ++ L A+ +F+F GN+LG+ Sbjct: 29 KPTKYQALLEGYLRFVRNMLLENVG-ERGLKYVPLIAAIGLFVFFGNILGM--------- 78 Query: 104 DAEHAKVFGKEIVSVTKELDKLHAEAGTVNTGSHEEAEVGVAWWKSPTADPAVAMGLAVM 163 V +++PTA+ + LA++ Sbjct: 79 ----------------------------------------VPGFEAPTANINTNLALALL 98 Query: 164 IFLMTHIVGMTRNTKNYFKHYFEPY----PFFFPINLIEQVSKLLTHGMRLFGNIFAGEV 219 +F H G N Y KH+ P PFFF + +I +++ +T +RLF N+ AG + Sbjct: 99 VFFYYHFEGFRENGLAYLKHFMGPIPLMAPFFFVVEVISHIARPITLSLRLFANMKAGAL 158 Query: 220 LISVILKLAALGVGGWIASVLGLIVWQGFSIFIGTIQAFIFVMLTMVYFSQMLETHDEH 278 L+ ++ L + S + LI IQ +IF++L++VY + + H+EH Sbjct: 159 LLLTLVSLVIKNPFTLVVSPVVLIFVIAIKFLAIFIQTYIFMILSVVYIAGAV-AHEEH 216 >aq_1792 [KT] COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains Length = 216 Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 57/239 (23%), Positives = 102/239 (42%), Gaps = 55/239 (23%) Query: 44 NPGKLQNFLEWAIEFVQGLISSTMDLKKGKPFLSLGMALIMFLFVGNLLGLPLGIVTDYH 103 P K Q LE + FV+ ++ + ++G ++ L A+ +F+F GN+LG+ Sbjct: 29 KPTKYQALLEGYLRFVRNMLLENVG-ERGLKYVPLIAAIGLFVFFGNILGM--------- 78 Query: 104 DAEHAKVFGKEIVSVTKELDKLHAEAGTVNTGSHEEAEVGVAWWKSPTADPAVAMGLAVM 163 V +++PTA+ + LA++ Sbjct: 79 ----------------------------------------VPGFEAPTANINTNLALALL 98 Query: 164 IFLMTHIVGMTRNTKNYFKHYFEPY----PFFFPINLIEQVSKLLTHGMRLFGNIFAGEV 219 +F H G N Y KH+ P PFFF + +I +++ +T +RLF N+ AG + Sbjct: 99 VFFYYHFEGFRENGLAYLKHFMGPIPLMAPFFFVVEVISHIARPITLSLRLFANMKAGAL 158 Query: 220 LISVILKLAALGVGGWIASVLGLIVWQGFSIFIGTIQAFIFVMLTMVYFSQMLETHDEH 278 L+ ++ L + S + LI IQ +IF++L++VY + + H+EH Sbjct: 159 LLLTLVSLVIKNPFTLVVSPVVLIFVIAIKFLAIFIQTYIFMILSVVYIAGAV-AHEEH 216 >aq_1796 [M] COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Length = 216 Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 57/239 (23%), Positives = 102/239 (42%), Gaps = 55/239 (23%) Query: 44 NPGKLQNFLEWAIEFVQGLISSTMDLKKGKPFLSLGMALIMFLFVGNLLGLPLGIVTDYH 103 P K Q LE + FV+ ++ + ++G ++ L A+ +F+F GN+LG+ Sbjct: 29 KPTKYQALLEGYLRFVRNMLLENVG-ERGLKYVPLIAAIGLFVFFGNILGM--------- 78 Query: 104 DAEHAKVFGKEIVSVTKELDKLHAEAGTVNTGSHEEAEVGVAWWKSPTADPAVAMGLAVM 163 V +++PTA+ + LA++ Sbjct: 79 ----------------------------------------VPGFEAPTANINTNLALALL 98 Query: 164 IFLMTHIVGMTRNTKNYFKHYFEPY----PFFFPINLIEQVSKLLTHGMRLFGNIFAGEV 219 +F H G N Y KH+ P PFFF + +I +++ +T +RLF N+ AG + Sbjct: 99 VFFYYHFEGFRENGLAYLKHFMGPIPLMAPFFFVVEVISHIARPITLSLRLFANMKAGAL 158 Query: 220 LISVILKLAALGVGGWIASVLGLIVWQGFSIFIGTIQAFIFVMLTMVYFSQMLETHDEH 278 L+ ++ L + S + LI IQ +IF++L++VY + + H+EH Sbjct: 159 LLLTLVSLVIKNPFTLVVSPVVLIFVIAIKFLAIFIQTYIFMILSVVYIAGAV-AHEEH 216 >aq_1798 [R] COG0491 Zn-dependent hydrolases, including glyoxylases Length = 216 Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 57/239 (23%), Positives = 102/239 (42%), Gaps = 55/239 (23%) Query: 44 NPGKLQNFLEWAIEFVQGLISSTMDLKKGKPFLSLGMALIMFLFVGNLLGLPLGIVTDYH 103 P K Q LE + FV+ ++ + ++G ++ L A+ +F+F GN+LG+ Sbjct: 29 KPTKYQALLEGYLRFVRNMLLENVG-ERGLKYVPLIAAIGLFVFFGNILGM--------- 78 Query: 104 DAEHAKVFGKEIVSVTKELDKLHAEAGTVNTGSHEEAEVGVAWWKSPTADPAVAMGLAVM 163 V +++PTA+ + LA++ Sbjct: 79 ----------------------------------------VPGFEAPTANINTNLALALL 98 Query: 164 IFLMTHIVGMTRNTKNYFKHYFEPY----PFFFPINLIEQVSKLLTHGMRLFGNIFAGEV 219 +F H G N Y KH+ P PFFF + +I +++ +T +RLF N+ AG + Sbjct: 99 VFFYYHFEGFRENGLAYLKHFMGPIPLMAPFFFVVEVISHIARPITLSLRLFANMKAGAL 158 Query: 220 LISVILKLAALGVGGWIASVLGLIVWQGFSIFIGTIQAFIFVMLTMVYFSQMLETHDEH 278 L+ ++ L + S + LI IQ +IF++L++VY + + H+EH Sbjct: 159 LLLTLVSLVIKNPFTLVVSPVVLIFVIAIKFLAIFIQTYIFMILSVVYIAGAV-AHEEH 216 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.327 0.142 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,105,220 Number of extensions: 804376 Number of successful extensions: 2585 Number of sequences better than 1.0e-05: 5 Number of HSP's gapped: 2575 Number of HSP's successfully gapped: 5 Length of query: 278 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 173 Effective length of database: 26,268,361 Effective search space: 4544426453 Effective search space used: 4544426453 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 115 (48.9 bits)