BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0064.0008.p
         (154 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ML1142_1 [C] COG0711 F0F1-type ATP synthase, subunit b                 74   8e-14
STM1614 [G] COG3775 Phosphotransferase system, galactitol-specif...    65   6e-11
MT1347_1 [C] COG0711 F0F1-type ATP synthase, subunit b                 62   4e-10
Rv1307_1 [C] COG0711 F0F1-type ATP synthase, subunit b                 62   5e-10

>ML1142_1 [C] COG0711 F0F1-type ATP synthase, subunit b
          Length = 250

 Score = 73.9 bits (180), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 85/149 (57%)

Query: 4   IIAFGILYFLLNKYAFGPLFSVMEKRRELVLQQMNEAAQTREQAVSYVEEQKQALQTARK 63
           ++ F  + +L+  Y   P+  +M  RR+ V QQ+ EAA+  ++ V   +   +A + A+ 
Sbjct: 8   LVGFAAIVYLVWWYVVPPVCRLMRARRDAVRQQLTEAAEAADRLVEASQAHTKATEDAKV 67

Query: 64  EALEIIEQSRQTSSKQTEQLIDQAKVEASRIKEEAVRDIQNEKNKAVEELRGELGAASVK 123
           EA  +++++ + + +  EQL  QA VEA RIK +  R ++  + +   +LR + G  SV+
Sbjct: 68  EAQRVVKEAVEDAKRIVEQLQAQADVEAERIKLQGARQVELLRAQLTRQLRLKFGHESVR 127

Query: 124 IASKLLQKEVSSDPEQEALVDQYLKEVGG 152
            A++L++  V+   +Q A VD++L ++  
Sbjct: 128 QAAELVRNHVADAVQQSATVDRFLDDLDA 156


>STM1614 [G] COG3775 Phosphotransferase system, galactitol-specific IIC
           component
          Length = 437

 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 5/128 (3%), Positives = 24/128 (18%)

Query: 4   IIAFGILYFLLNKYAFGPLFSVMEKRRELVLQQMNEAAQTREQAVSYVEEQKQALQTARK 63
           +    I+  L+ +  +              +          +     ++   +       
Sbjct: 14  VPIIMIIIGLIFRIPWLQAVKAGVTVGIGFVGMGLVIVMAIDSLSPPIKVMIERFGLTLH 73

Query: 64  EALEIIEQSRQTSSKQTEQLIDQAKVEASRIKEEAVRDIQNEKNKAVEELRGELGAASVK 123
                   +           +    +    +     R  +             +    V+
Sbjct: 74  VFDVGAGPASGVGYATAIGAMIIPVIFLLNVGMLVTRLTKTMNVDIYNYWHYAITGTVVQ 133

Query: 124 IASKLLQK 131
           + +  L  
Sbjct: 134 LMTGSLIY 141


>MT1347_1 [C] COG0711 F0F1-type ATP synthase, subunit b
          Length = 250

 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 83/147 (56%)

Query: 4   IIAFGILYFLLNKYAFGPLFSVMEKRRELVLQQMNEAAQTREQAVSYVEEQKQALQTARK 63
           +  F ++ +L+ ++    +  +M  R++ V QQ+ +AA   ++     +   +AL+ A+ 
Sbjct: 8   LFGFAVIVYLVWRFIVPVVGRLMSARQDTVRQQLADAAAAADRLAEASQAHTKALEDAKS 67

Query: 64  EALEIIEQSRQTSSKQTEQLIDQAKVEASRIKEEAVRDIQNEKNKAVEELRGELGAASVK 123
           EA  ++E++R  + +  EQL  QA VEA RIK +  R +   + +   +LR ELG  SV+
Sbjct: 68  EAHRVVEEARTDAERIAEQLEAQADVEAERIKMQGARQVDLIRAQLTRQLRLELGHESVR 127

Query: 124 IASKLLQKEVSSDPEQEALVDQYLKEV 150
            A +L++  V+   +Q A VD++L ++
Sbjct: 128 QARELVRNHVADQAQQSATVDRFLDQL 154


>Rv1307_1 [C] COG0711 F0F1-type ATP synthase, subunit b
          Length = 250

 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 83/147 (56%)

Query: 4   IIAFGILYFLLNKYAFGPLFSVMEKRRELVLQQMNEAAQTREQAVSYVEEQKQALQTARK 63
           +  F ++ +L+ ++    +  +M  R++ V QQ+ +AA   ++     +   +AL+ A+ 
Sbjct: 8   LFGFAVIVYLVWRFIVPLVGRLMSARQDTVRQQLADAAAAADRLAEASQAHTKALEDAKS 67

Query: 64  EALEIIEQSRQTSSKQTEQLIDQAKVEASRIKEEAVRDIQNEKNKAVEELRGELGAASVK 123
           EA  ++E++R  + +  EQL  QA VEA RIK +  R +   + +   +LR ELG  SV+
Sbjct: 68  EAHRVVEEARTDAERIAEQLEAQADVEAERIKMQGARQVDLIRAQLTRQLRLELGHESVR 127

Query: 124 IASKLLQKEVSSDPEQEALVDQYLKEV 150
            A +L++  V+   +Q A VD++L ++
Sbjct: 128 QARELVRNHVADQAQQSATVDRFLDQL 154


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.310    0.126    0.312 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,899,450
Number of extensions: 261437
Number of successful extensions: 1463
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 1457
Number of HSP's successfully gapped: 10
Length of query: 154
Length of database: 38,378,431
Length adjustment: 97
Effective length of query: 57
Effective length of database: 27,191,033
Effective search space: 1549888881
Effective search space used: 1549888881
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 111 (47.4 bits)