BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0064.0004.p (465 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin2673 [C] COG0055 F0F1-type ATP synthase, beta subunit 642 0.0 L65637 [S] COG1302 Uncharacterized protein conserved in bacteria 640 0.0 MYPU_2660 [C] COG0055 F0F1-type ATP synthase, beta subunit 591 e-169 UU129 [C] COG0055 F0F1-type ATP synthase, beta subunit 546 e-155 lin0138 [C] COG0055 F0F1-type ATP synthase, beta subunit 419 e-117 >lin2673 [C] COG0055 F0F1-type ATP synthase, beta subunit Length = 473 Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/469 (69%), Positives = 376/469 (80%), Gaps = 4/469 (0%) Query: 1 MNKGRVVSIMGPVVDIEFERGQLPEIFNA--IKIVTSLANGSTSELTLEVSNHLGDNLVR 58 M+KG+V+ +MGPVVD++FE G LPEI+NA I+ + TS+LTLEV+ LGD++VR Sbjct: 1 MSKGQVIQVMGPVVDVKFEGGNLPEIYNALVIEYKSDAEEAPTSQLTLEVAIQLGDDVVR 60 Query: 59 CIAMSSTDGLVRGLEALDQGGPISVPVGDATLGRVFNVLGNPIDNGAEVVAD--RNPIHR 116 IAM+STDG+ RG+E +D G PI+VPVG TLGRVFNVLGN ID + +D RN IHR Sbjct: 61 TIAMASTDGVQRGMEVIDTGSPITVPVGTVTLGRVFNVLGNTIDLDEPLPSDIKRNKIHR 120 Query: 117 LAPTFDELSTQAEILETGIKVIDLLAPYAXXXXXXXXXXXXXXXTVTIQELINNIAQEHG 176 APTFD+L+T EILETGIKV+DLLAPY TV IQELI+NIAQEHG Sbjct: 121 EAPTFDQLATTTEILETGIKVVDLLAPYLKGGKIGLFGGAGVGKTVLIQELIHNIAQEHG 180 Query: 177 GISVFAGVGERTREGNDLYHEMTDSGVIKKTAMVFGQMNEPPGARLRVALTGLTMAEYFR 236 GISVFAGVGERTREGNDLY EM DSGVI+KTAMVFGQMNEPPGAR+RVALTGLT+AEYFR Sbjct: 181 GISVFAGVGERTREGNDLYFEMKDSGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFR 240 Query: 237 DVEGRDTLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSV 296 D E +D LLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITST GSV Sbjct: 241 DEEHQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTNVGSV 300 Query: 297 TSIQAIYVXXXXXXXXXXXXXXXHLDATTNLERKISEKGIFPAVDPLASSSRILAPEIVG 356 TSIQAIYV HLDATTNLERK++E+GI+PAVDPLAS+SR L+P+IVG Sbjct: 301 TSIQAIYVPADDYTDPAPATTFAHLDATTNLERKLTEQGIYPAVDPLASTSRALSPDIVG 360 Query: 357 EEHYNVAQGVKQLLQRYTELQDIIAILGMDELSEEDKVIVARARKVERFLSQPFHVAEQF 416 EEHY VA V++LLQRY ELQDIIAILGMDELS+EDK V+RAR+V+ FLSQ FHVAEQF Sbjct: 361 EEHYEVATEVQRLLQRYKELQDIIAILGMDELSDEDKQSVSRARRVQFFLSQNFHVAEQF 420 Query: 417 TGFKGKYVPIKETVRSFKEILEGKHDDLPEAAFLFVGTIEEAVEKAKSM 465 TG KG YVP+KETV+ FK++L GK+D +PE AF VG IE+ +EKAK M Sbjct: 421 TGQKGSYVPVKETVKGFKDLLAGKYDHIPEDAFRSVGRIEDVLEKAKDM 469 >L65637 [S] COG1302 Uncharacterized protein conserved in bacteria Length = 469 Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/468 (70%), Positives = 374/468 (79%), Gaps = 4/468 (0%) Query: 1 MNKGRVVSIMGPVVDIEF-ERGQLPEIFNAIKIVTSLANGSTSELTLEVSNHLGDNLVRC 59 M+ G++ I+GPVVD+EF +LPEI NA+ IV NG +++TLEV+ LGD VR Sbjct: 1 MSSGKITQIIGPVVDVEFGSDAKLPEINNAL-IVYKDVNGLKTKITLEVALELGDGAVRT 59 Query: 60 IAMSSTDGLVRGLEALDQGGPISVPVGDATLGRVFNVLGNPIDNGAEVVAD--RNPIHRL 117 IAM STDGL RGLE LD G +SVPVG+ATLGRVFNVLG+ ID G E AD RNPIH+ Sbjct: 60 IAMESTDGLTRGLEVLDTGKAVSVPVGEATLGRVFNVLGDVIDGGEEFAADAERNPIHKK 119 Query: 118 APTFDELSTQAEILETGIKVIDLLAPYAXXXXXXXXXXXXXXXTVTIQELINNIAQEHGG 177 APTFDELST E+L TGIKV+DLLAPY TV IQELI+NIAQEHGG Sbjct: 120 APTFDELSTANEVLVTGIKVVDLLAPYLKGGKVGLFGGAGVGKTVLIQELIHNIAQEHGG 179 Query: 178 ISVFAGVGERTREGNDLYHEMTDSGVIKKTAMVFGQMNEPPGARLRVALTGLTMAEYFRD 237 ISVF GVGERTREGNDLY EM +SGVI+KTAMVFGQMNEPPGAR+RVALTGLT+AEYFRD Sbjct: 180 ISVFTGVGERTREGNDLYWEMKESGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRD 239 Query: 238 VEGRDTLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSVT 297 V+G+D LLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSVT Sbjct: 240 VQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSVT 299 Query: 298 SIQAIYVXXXXXXXXXXXXXXXHLDATTNLERKISEKGIFPAVDPLASSSRILAPEIVGE 357 SIQAIYV HLDATTNLER++++ GI+PAVDPLASSSR L PEIVGE Sbjct: 300 SIQAIYVPADDYTDPAPATAFAHLDATTNLERRLTQMGIYPAVDPLASSSRALTPEIVGE 359 Query: 358 EHYNVAQGVKQLLQRYTELQDIIAILGMDELSEEDKVIVARARKVERFLSQPFHVAEQFT 417 EHY VA V+++LQRY ELQDIIAILGMDELS+++K++V RAR+++ FLSQ FHVAEQFT Sbjct: 360 EHYEVAMEVQRVLQRYKELQDIIAILGMDELSDDEKILVGRARRIQFFLSQNFHVAEQFT 419 Query: 418 GFKGKYVPIKETVRSFKEILEGKHDDLPEAAFLFVGTIEEAVEKAKSM 465 G G YVPI +TV FKEILEGK+D++PE AF VG IE+ +EKAKSM Sbjct: 420 GQPGSYVPIDKTVHDFKEILEGKYDEVPEDAFRGVGPIEDVLEKAKSM 467 >MYPU_2660 [C] COG0055 F0F1-type ATP synthase, beta subunit Length = 475 Score = 591 bits (1524), Expect = e-169, Method: Compositional matrix adjust. Identities = 297/463 (64%), Positives = 353/463 (76%), Gaps = 6/463 (1%) Query: 2 NKGRVVSIMGPVVDIEFERGQLPEIFNAIKIVTSLANGSTSELTLEVSNHLGDNLVRCIA 61 N G++V I+GPVVDI F ++P I+N +++V ++ EV+ H+GD +VR I+ Sbjct: 5 NVGKIVQILGPVVDISFAGQKIPAIYNNLELVFE-----NNKYNFEVAQHIGDEVVRTIS 59 Query: 62 MSSTDGLVRGLEALDQGGPISVPVGDATLGRVFNVLGNPIDNGAEVVADR-NPIHRLAPT 120 M ST+GL RGLE +D G PI VPVG L R+FNVLG IDN E+ A IH AP+ Sbjct: 60 MVSTNGLSRGLEVIDTGAPIMVPVGKEVLSRMFNVLGQTIDNKGEIEAKEFRSIHASAPS 119 Query: 121 FDELSTQAEILETGIKVIDLLAPYAXXXXXXXXXXXXXXXTVTIQELINNIAQEHGGISV 180 ++E + +EILETGIKVIDLL PY+ TV +QELINNIA +HGG+SV Sbjct: 120 YEEQNDSSEILETGIKVIDLLVPYSKGGKIGLFGGAGVGKTVLVQELINNIATQHGGLSV 179 Query: 181 FAGVGERTREGNDLYHEMTDSGVIKKTAMVFGQMNEPPGARLRVALTGLTMAEYFRDVEG 240 FAGVGERTREGNDLYHEM SGV+ KT +VFGQMNEPPGAR+RVALTGLTMAEYFRD Sbjct: 180 FAGVGERTREGNDLYHEMIASGVLDKTTLVFGQMNEPPGARMRVALTGLTMAEYFRDKFK 239 Query: 241 RDTLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSVTSIQ 300 +D LLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTK GS+TS+Q Sbjct: 240 QDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKNGSITSVQ 299 Query: 301 AIYVXXXXXXXXXXXXXXXHLDATTNLERKISEKGIFPAVDPLASSSRILAPEIVGEEHY 360 A+YV HLDA T LER I+ GI+PA+DPLASSSR+L P I+G EHY Sbjct: 300 AVYVPADDLTDPAPATTFTHLDAKTVLERNIAALGIYPAIDPLASSSRMLDPLIIGNEHY 359 Query: 361 NVAQGVKQLLQRYTELQDIIAILGMDELSEEDKVIVARARKVERFLSQPFHVAEQFTGFK 420 VA V+ +LQR+ ELQDIIAILG+ ELSEEDK +V RARK+ FLSQPF VAE+F+G K Sbjct: 360 LVALEVQNILQRFKELQDIIAILGIGELSEEDKKLVFRARKIRNFLSQPFTVAEKFSGKK 419 Query: 421 GKYVPIKETVRSFKEILEGKHDDLPEAAFLFVGTIEEAVEKAK 463 GK+VP+KET+RSFKEILEGKHD+LPE AFL+VG+I+EA+EKAK Sbjct: 420 GKFVPLKETIRSFKEILEGKHDNLPEDAFLYVGSIDEAIEKAK 462 >UU129 [C] COG0055 F0F1-type ATP synthase, beta subunit Length = 464 Score = 546 bits (1406), Expect = e-155, Method: Compositional matrix adjust. Identities = 274/462 (59%), Positives = 341/462 (73%), Gaps = 5/462 (1%) Query: 1 MNKGRVVSIMGPVVDIEFERGQLPEIFNAIKIVTSLANGSTSELTLEVSNHLGDNLVRCI 60 + KG++ I+GPVVD+ F LPEI A+++ N S+L LEVS +GDN+ RCI Sbjct: 4 VKKGKINQILGPVVDVRFPSEWLPEINTALEL-----NNHGSKLVLEVSQLVGDNIARCI 58 Query: 61 AMSSTDGLVRGLEALDQGGPISVPVGDATLGRVFNVLGNPIDNGAEVVADRNPIHRLAPT 120 AM +TDGLVRG E ++ PI++PVG LGR+FNV G+PID R PIHR AP+ Sbjct: 59 AMDTTDGLVRGQEVINTQKPITMPVGKQVLGRMFNVTGDPIDEQPAPTGKRMPIHRPAPS 118 Query: 121 FDELSTQAEILETGIKVIDLLAPYAXXXXXXXXXXXXXXXTVTIQELINNIAQEHGGISV 180 F E + EILETGIKV+DLL P+A TV +QELI+NIA+ HGG+SV Sbjct: 119 FAEQAESIEILETGIKVVDLLVPFAKGGKIGLFGGAGVGKTVLMQELIHNIAKNHGGLSV 178 Query: 181 FAGVGERTREGNDLYHEMTDSGVIKKTAMVFGQMNEPPGARLRVALTGLTMAEYFRDVEG 240 FAGVGERTREGNDLY+EM +S V+ KTA+VFGQMNEPPGAR+RVAL+GLTMAE FRD G Sbjct: 179 FAGVGERTREGNDLYYEMAESDVLDKTALVFGQMNEPPGARMRVALSGLTMAEEFRDAFG 238 Query: 241 RDTLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSVTSIQ 300 +D LLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLA EMGQLQERITSTKKGS+TS+Q Sbjct: 239 QDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLAFEMGQLQERITSTKKGSITSVQ 298 Query: 301 AIYVXXXXXXXXXXXXXXXHLDATTNLERKISEKGIFPAVDPLASSSRILAPEIVGEEHY 360 A+YV HLDA L+R I+ G++PA+ PL S+SR+L P +VG +HY Sbjct: 299 AVYVPADDLTDPAPATTFSHLDAKVVLDRAIASLGLYPAISPLQSTSRLLDPLVVGVKHY 358 Query: 361 NVAQGVKQLLQRYTELQDIIAILGMDELSEEDKVIVARARKVERFLSQPFHVAEQFTGFK 420 +VA+ V ++LQR+ ELQDIIAILGMDELSEED+ +V RARKV +LSQP HVAE+F+G Sbjct: 359 SVARRVIEILQRFMELQDIIAILGMDELSEEDRQLVMRARKVRNYLSQPSHVAEKFSGQP 418 Query: 421 GKYVPIKETVRSFKEILEGKHDDLPEAAFLFVGTIEEAVEKA 462 G V +++T+ F++IL+G+ DD+ E FL+VG I++ EKA Sbjct: 419 GLSVKLEDTIEGFRKILDGECDDIHEQHFLYVGKIDDVFEKA 460 >lin0138 [C] COG0055 F0F1-type ATP synthase, beta subunit Length = 456 Score = 419 bits (1078), Expect = e-117, Method: Compositional matrix adjust. Identities = 229/457 (50%), Positives = 292/457 (63%), Gaps = 7/457 (1%) Query: 2 NKGRVVSIMGPVVDIEFERGQLPEIFNAIKIVTSLANGSTSELTLEVSNHLGDNLVRCIA 61 N G ++SI G V+ IEF +LPEI +A++ T EV H G N V IA Sbjct: 4 NIGTIISISGFVLKIEFNESELPEISHALEYKTHQGT-----YLAEVVQHTGINTVSAIA 58 Query: 62 MSSTDGLVRGLEALDQGGPISVPVGDATLGRVFNVLGNPIDNGAEVVAD-RNPIHRLAPT 120 + GL RG E ++ G PI VPVG+ GR+ NV G ID E A+ + PI R P Sbjct: 59 IGEVSGLARGAEVINLGHPIEVPVGETVQGRMLNVYGKAIDGLPEPEAEVKWPIFREQPL 118 Query: 121 FDELSTQAEILETGIKVIDLLAPYAXXXXXXXXXXXXXXXTVTIQELINNIAQEHGGISV 180 EL T EIL TGIKVIDL+ P +V +QELINNI+ GG SV Sbjct: 119 LRELDTNKEILYTGIKVIDLICPILKGGKTGLFGGAGVGKSVLMQELINNISM-MGGNSV 177 Query: 181 FAGVGERTREGNDLYHEMTDSGVIKKTAMVFGQMNEPPGARLRVALTGLTMAEYFRDVEG 240 F GVGER REG LY+E+ SGV+ +T +V GQMNE PG R+RVALTGLT+AEY RD E Sbjct: 178 FTGVGERVREGIGLYNELESSGVLPQTTVVLGQMNESPGVRMRVALTGLTIAEYLRDEEK 237 Query: 241 RDTLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSVTSIQ 300 +D LLFIDN+FRF QAGSEVS+L G++P GYQ TL+ E+G Q+RI STK GS+TSIQ Sbjct: 238 KDVLLFIDNVFRFIQAGSEVSSLQGKIPITGGYQSTLSKEVGDFQDRIASTKNGSITSIQ 297 Query: 301 AIYVXXXXXXXXXXXXXXXHLDATTNLERKISEKGIFPAVDPLASSSRILAPEIVGEEHY 360 +++ HLD+T LER I+ GIFPAV+PL S SR L P VGE HY Sbjct: 298 CVFLPADDIDDPSAVATFSHLDSTIVLERSIAALGIFPAVNPLQSFSRALNPTFVGERHY 357 Query: 361 NVAQGVKQLLQRYTELQDIIAILGMDELSEEDKVIVARARKVERFLSQPFHVAEQFTGFK 420 +A VK +LQRY ELQ+II +LGM ELS+EDK +V RARK+ FLSQPF+V+E+FTG + Sbjct: 358 QLAVQVKFILQRYMELQEIINVLGMAELSDEDKKLVHRARKIRNFLSQPFYVSEKFTGTE 417 Query: 421 GKYVPIKETVRSFKEILEGKHDDLPEAAFLFVGTIEE 457 G +V I++ + S + IL G++D+ E FLF+G+ ++ Sbjct: 418 GIFVEIEDLLSSVERILNGEYDERSEREFLFIGSYKD 454 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.135 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 30,675,129 Number of extensions: 1223566 Number of successful extensions: 2578 Number of sequences better than 1.0e-05: 49 Number of HSP's gapped: 2480 Number of HSP's successfully gapped: 49 Length of query: 465 Length of database: 38,378,431 Length adjustment: 110 Effective length of query: 355 Effective length of database: 25,691,691 Effective search space: 9120550305 Effective search space used: 9120550305 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 118 (50.1 bits)