BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0061.0003.p
         (108 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RP407 [M] COG0739 Membrane proteins related to metalloendopeptid...   106   1e-23
RC0557 [M] COG0739 Membrane proteins related to metalloendopepti...   104   3e-23
SMc00539 [M] COG0739 Membrane proteins related to metalloendopep...   100   9e-22
AGc3364 [M] COG0739 Membrane proteins related to metalloendopept...   100   9e-22
Cj1235 [M] COG0739 Membrane proteins related to metalloendopepti...    96   2e-20

>RP407 [M] COG0739 Membrane proteins related to metalloendopeptidases
          Length = 458

 Score =  106 bits (264), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/99 (48%), Positives = 62/99 (62%)

Query: 7   KMHTGTDFAVPQGTSIHAADSGTVIVAEWWSGYGYTVVIDHGGGVWTLYGHIREGGIKVS 66
           KMH G DFA P GT I++A +G +    W SGYG  + + H G + T Y H       + 
Sbjct: 312 KMHRGVDFAAPTGTPIYSAGNGVITEIGWKSGYGKFIQVKHSGTLSTAYAHASSFAKNLK 371

Query: 67  VGDRVSRGQTIAESGATGRVTGPHLHFEVRIDGKPVDPM 105
           VG  V +GQ IA  G+TGR +GPHLH+EV+IDGK V+PM
Sbjct: 372 VGSIVKQGQVIAYVGSTGRASGPHLHYEVKIDGKHVNPM 410


>RC0557 [M] COG0739 Membrane proteins related to metalloendopeptidases
          Length = 476

 Score =  104 bits (260), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/99 (48%), Positives = 61/99 (61%)

Query: 7   KMHTGTDFAVPQGTSIHAADSGTVIVAEWWSGYGYTVVIDHGGGVWTLYGHIREGGIKVS 66
           KMH G DFA P GT I++A +G +    W SGYG  + + H G + T Y H       + 
Sbjct: 332 KMHRGVDFAAPTGTPIYSAGNGVITEIGWKSGYGKFIQVKHSGTLSTAYAHASNFAKNLK 391

Query: 67  VGDRVSRGQTIAESGATGRVTGPHLHFEVRIDGKPVDPM 105
           VG  V +GQ IA  G+TGR T PHLH+EV+IDGK V+PM
Sbjct: 392 VGSIVKQGQIIAYVGSTGRATAPHLHYEVKIDGKHVNPM 430


>SMc00539 [M] COG0739 Membrane proteins related to metalloendopeptidases
          Length = 413

 Score = 99.8 bits (247), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 52/101 (51%), Positives = 63/101 (62%), Gaps = 2/101 (1%)

Query: 8   MHTGTDFAVPQGTSIHAADSGTVIVAEWWSGYGYTVVIDHGGGVWTLYGHIREGGIKVSV 67
           +H GTDF  P GT + A   GTV  A    GYG  + IDHG GV T Y H+    I V+V
Sbjct: 304 LHAGTDFRAPTGTRVRATAGGTVTAAGPAGGYGNMIEIDHGNGVSTRYAHL--SAILVNV 361

Query: 68  GDRVSRGQTIAESGATGRVTGPHLHFEVRIDGKPVDPMPYL 108
           GD V     IA+SG+TGR TGPHLH+EVR++G  VDP  +L
Sbjct: 362 GDAVKADAVIAKSGSTGRSTGPHLHYEVRLNGHAVDPARFL 402


>AGc3364 [M] COG0739 Membrane proteins related to metalloendopeptidases
          Length = 289

 Score = 99.8 bits (247), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 0/101 (0%), Positives = 0/101 (0%), Gaps = 2/101 (1%)

Query: 8   MHTGTDFAVPQGTSIHAADSGTVIVAEWWSGYGYTVVIDHGGGVWTLYGHIREGGIKVSV 67
                                                                       
Sbjct: 323 --                                                           380

Query: 68  GDRVSRGQTIAESGATGRVTGPHLHFEVRIDGKPVDPMPYL 108
                                                    
Sbjct: 381                                           421


>Cj1235 [M] COG0739 Membrane proteins related to metalloendopeptidases
          Length = 273

 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 70/105 (66%), Gaps = 2/105 (1%)

Query: 4   EVGKMHTGTDFAVPQGTSIHAADSGTVIVAEWWSGYGYTVVIDHGGGVWTLYGHIREGGI 63
           +V   H+GTDF    GT I+AA+SG V +A+     G +VVIDHG G+++ Y H+ +  I
Sbjct: 163 KVASYHSGTDFRATTGTPIYAANSGVVKIAKDRYFAGNSVVIDHGFGIYSQYYHLSK--I 220

Query: 64  KVSVGDRVSRGQTIAESGATGRVTGPHLHFEVRIDGKPVDPMPYL 108
            V +G ++ +G+ I  SGATGRV+GPHLHF +   GK VDP+ ++
Sbjct: 221 DVKIGQKIKKGELIGLSGATGRVSGPHLHFGILAGGKQVDPLDFV 265


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.139    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 9,884,082
Number of extensions: 390471
Number of successful extensions: 1026
Number of sequences better than 1.0e-05: 119
Number of HSP's gapped: 910
Number of HSP's successfully gapped: 119
Length of query: 108
Length of database: 38,378,431
Length adjustment: 76
Effective length of query: 32
Effective length of database: 29,613,047
Effective search space: 947617504
Effective search space used: 947617504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)