BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0060.0012.p (314 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yacD [O] COG0760 Parvulin-like peptidyl-prolyl isomerase 91 2e-18 STM0452 [O] COG0760 Parvulin-like peptidyl-prolyl isomerase 70 6e-12 ZybaU [O] COG0760 Parvulin-like peptidyl-prolyl isomerase 67 3e-11 ybaU [O] COG0760 Parvulin-like peptidyl-prolyl isomerase 67 3e-11 ZybaU [O] COG0760 Parvulin-like peptidyl-prolyl isomerase 66 6e-11 >BS_yacD [O] COG0760 Parvulin-like peptidyl-prolyl isomerase Length = 297 Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/276 (25%), Positives = 135/276 (48%), Gaps = 14/276 (5%) Query: 17 AIATLMLGGLLFWSLRAMAILK----GEAAEGESSDIARAGDQPVTDQQWISELKKKHGD 72 I T++LG LL + L G ++ GES IA G + VT ++W+ E++ ++G Sbjct: 5 TIWTIILGALLVCCIAVAYTLTKSQAGASSSGES--IATIGGKSVTREEWLKEMEDQYGK 62 Query: 73 EVLLTLLNHIVVSKEAKALGITVTDKEIEKELQSSIAXXXXXXXXXXXXXXXLGLSREEV 132 L ++N VV + AK + ++ E+++E A + +E Sbjct: 63 STLEDMINVRVVEQLAKKNKLKISKSEVDREFLLIKAVNNSFYEDEHT-------TEKEW 115 Query: 133 REEAAYRLTLQAIATAGITISESEIDDYLAQNAGRFTPKKEMQLSMIKVHTYEEAEKVMD 192 +++ Y + L+ + T I IS E++ + +N + ++ I V EEA +V+ Sbjct: 116 KDQIRYNILLEDLLTRDIDISNKELESFYNKNKELYQFDDSYRIRHIVVKDEEEAREVLK 175 Query: 193 RLEQGEDFAALATELSIDEESRLHGGSIGIVEEDDPFWPEDLLQTAAGLEAGDIAG-PLQ 251 L+ G F A+A E S D + +GG +G V E P ++ A L+ + + P++ Sbjct: 176 ELKGGSSFEAVAAERSTDRYTSPYGGDLGFVTEASDNIPSAYIEEAKTLKEDEWSQEPIK 235 Query: 252 ARDAYAVIRLEKAIVPRKQNQAEIRQQVREELALEK 287 + YA+I+L++ + R + E++ Q+R ++A+++ Sbjct: 236 VSNGYAIIQLKEKLKARTFSFDEVKDQIRRQIAMDQ 271 >STM0452 [O] COG0760 Parvulin-like peptidyl-prolyl isomerase Length = 623 Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 85/152 (55%), Gaps = 7/152 (4%) Query: 146 ATAGITISESEIDDYLAQNAGRFTPKKEMQLSMIKVHTYEEAEKVMDRLEQGEDFAALAT 205 AT +S+++I Y Q+ +FT + ++ S+I+ T ++A+ V+D L +GEDFA LA Sbjct: 241 ATMQAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFATLAK 300 Query: 206 ELSIDEESRLHGGSIGIVEEDDPFWPEDLLQTAAGLEAGDIAGPLQARDAYAVIRLEK-- 263 E S D S +GG +G +EE PE L+ A E G I+G +++ + V RL+ Sbjct: 301 EKSTDIISARNGGDMGWLEESATV-PE--LKNAGLKEKGQISGVIKSSVGFLVARLDDIQ 357 Query: 264 --AIVPRKQNQAEIRQQVREELALEKAPPLQQ 293 + P + + +I +V++E AL+ LQQ Sbjct: 358 PAKVKPLSEVRDDIAAKVKQEKALDAYYALQQ 389 >ZybaU [O] COG0760 Parvulin-like peptidyl-prolyl isomerase Length = 623 Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 86/153 (56%), Gaps = 9/153 (5%) Query: 146 ATAGITISESEIDDYLAQNAGRFTPKKEMQLSMIKVHTYEEAEKVMDRLEQGEDFAALAT 205 AT +S+++I Y Q+ +FT + + S+I+ T +EA+ V+D L +G DFAALA Sbjct: 241 ATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAK 300 Query: 206 ELSIDEESRLHGGSIGIVEEDDPFWPEDLLQTAAGL-EAGDIAGPLQARDAYAVIRLEKA 264 E S D S +GG +G +E D P++L AGL E G ++G +++ + ++RL+ Sbjct: 301 EKSADIISARNGGDMGWLE--DATIPDEL--KNAGLKEKGQLSGVIKSSVGFLIVRLDDI 356 Query: 265 IVPRKQNQAEIRQ----QVREELALEKAPPLQQ 293 + ++ E+R +V+ E AL+ LQQ Sbjct: 357 QPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQ 389 >ybaU [O] COG0760 Parvulin-like peptidyl-prolyl isomerase Length = 623 Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 86/153 (56%), Gaps = 9/153 (5%) Query: 146 ATAGITISESEIDDYLAQNAGRFTPKKEMQLSMIKVHTYEEAEKVMDRLEQGEDFAALAT 205 AT +S+++I Y Q+ +FT + + S+I+ T +EA+ V+D L +G DFAALA Sbjct: 241 ATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAK 300 Query: 206 ELSIDEESRLHGGSIGIVEEDDPFWPEDLLQTAAGL-EAGDIAGPLQARDAYAVIRLEKA 264 E S D S +GG +G +E D P++L AGL E G ++G +++ + ++RL+ Sbjct: 301 EKSADIISARNGGDMGWLE--DATIPDEL--KNAGLKEKGQLSGVIKSSVGFLIVRLDDI 356 Query: 265 IVPRKQNQAEIRQ----QVREELALEKAPPLQQ 293 + ++ E+R +V+ E AL+ LQQ Sbjct: 357 QPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQ 389 Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 82/144 (56%), Gaps = 5/144 (3%) Query: 146 ATAGITISESEIDDYLAQNAGRFTPKKEMQLSMIKVHTYEEAEKVMDRLEQGEDFAALAT 205 AT +S+++I Y Q+ +FT + + S+I+ T +EA+ V+D L +G DFAALA Sbjct: 241 ATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAK 300 Query: 206 ELSIDEESRLHGGSIGIVEEDDPFWPEDLLQTAAGL-EAGDIAGPLQARDAYAVIRLEKA 264 E S D S +GG +G +E D P++L AGL E G ++G +++ + ++RL+ Sbjct: 301 EKSADIISARNGGDMGWLE--DATIPDEL--KNAGLKEKGQLSGVIKSSVGFLIVRLDDI 356 Query: 265 IVPRKQNQAEIRQQVREELALEKA 288 + ++ E+R + ++ EKA Sbjct: 357 QPAKVKSLDEVRDDIAAKVKHEKA 380 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.314 0.131 0.351 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,063,782 Number of extensions: 726492 Number of successful extensions: 2190 Number of sequences better than 1.0e-05: 20 Number of HSP's gapped: 2191 Number of HSP's successfully gapped: 20 Length of query: 314 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 208 Effective length of database: 26,153,027 Effective search space: 5439829616 Effective search space used: 5439829616 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 116 (49.3 bits)